Pseudomonas sp. PH1b, U873_RS0123600
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGGCAGCAACAGCGTGACCATCGAATACAAGGAGTTCGGCATTCGCCTGACCTTGACCCCGACCATCGTCGACCGTGGCCGCATATCCCTGAAAGTCG CCCCCGAGGTCAGCGAGCTGGACTACAGCAACACCGTGAACATTGCCGGGACCCAAGTCCCGGCCCTGACCATTCGCCGCACCGATACCAGCATTTCCCT GGCCGACGGCGAAAGCTTCGTCATCAGTGGCTTGATCAGCACCCGCAACAGCTCCCAGGTGAACAAGTTTCCAGGGTTGGGGGACATTCCGGTCATCGGT GCCTTCTTCCGCGACACCTCGATCAATCGCGAGGAACGGGAGTTGCTGATGATCGTCACCCCCCACCTGGTCCAGCCCCTGGCCGCCGACGCCAAGCTGC CCGCCCTGCCCGGCGAACGCCTGCGCAGCTACGACCCGAACTTCTATCGCATGTTCTTCCTCGAGAACGGCAACTTCGACAAGCGCAGTGGGCTGTCGCA
|
|
| DNA Sequence for Gene |
>U873_RS0123600
ATGAGCCAGAGCCTGAGCCAGACATTCCTCGCCATCACCCGCAACAGCACCGATCTCGAGTGGCTGCAAGGGGCCCTGGCGCCCCTGGGCCAGGTCGTGG GGACCGCTGGCAGCCTGGACGAACTGCTGGCACTGGTGGACGTGACCTTCGCCAACCTGGTGTTCGTCGGCCTCGATCGCGAACACGTGGTGGCCCAGGC AGCACTGATCGAGGGCGCCCTGGAAGCCAAGCCGATGCTGGCGATCGTCGCCCTGGGCGATGGCATGGACAACCAACTGGTGCTCAACGCCATGCGTGCT GGCGCTCGAGACTTCGTGGCCTACGGTTCACGCTCCAGCGAGGTTGCCGGCCTGGTCAGGCGCCTGAGCAAACGCCTGCCGGCGGTCACGCCCAGTACCC AGCTGGGGGGGCTGACCGTGCTCTACGGCACCCAGAGCGACGGCGACGGCGCATTACTGGCCGGGCACCTGGCGCTGGTGGTGCAAAAAAGCGGCCAGCA AACCCTGCTGCTGGACCTCGGCCTGCCCCGGGGCGACAGCCTGGCCCTGATGGGACTGGAAAGCTCGTTCCACTTTGGCGATGCCCTCAGGCATCTGCGG CGCCTGGACGCGACCCTGATCGACAGCGCCTTCACCAGTACCGACTCGGGTTTGCGGATCCTCGCCTACGCCAGTCACGACGAGCCCCTGGAACACACCA GTGCGGCAGAGCTGTACATGTTGCTCAGCGCCTTGCGCCAGCACTTCCAGCACATCGTGGTGAACCTTGCCGGGCAACCGGACAGCGAAGCCCTGCGCAC CTTCGTCAGCCATTGCGACAAGTTGCTCTGGCGCACCGACCAGAGCGTGCTCGACTGCCGACGCAACCTGACGGTGCTCAACCACTGGCGGGAAAAAGGC ATGAAGCTCGAACATGCCCGCCTGCTGGTGGACCGTTACCTGCGCGCAGTCGCGCCGGACTCCGAAACCCTGGGCAAGACCTTCGCCCTGGAAGTGATCG CGGTACTGGCCTACAGCCCGGAAGTCCGCCTGAACGCCAAGAACCAGGGCGTCAGCCTGTTTGAACTGGCCCCCCGCGAGGCCCTGACCCAAAGCCTGAA AACCCTGGGTGAGCGACTGGCCAAGCGCTCCGAAGGCCTGCCCCAGCCCAAGGCCGGCTGGCTCAATCGGATCATGGGGGGCAAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGGCGAAAAACTCTTTGGCGCCACCACTCGCGCGGCCCCGGGCAACAGTGACCACGAAGGCCTGAAACTGGTGTTGCACCGCTACATCATCGATGCCAT CGAAGAGTCGGGGAAAAACCTGCTGGAAAGCTCCCGGCAGAACCTCTCGCAGTTCGTCATCGACAAGGTGGCGGAATACATCGCGCGCATGCACCTGGCC ATTTCCCGCTACGAGATGGAGCGCCTGGCGGAAGAAATCGTCGATGAACTGACCGGCTTCGGCCCTCTGGAAGTGCTGCTGCGTGACCCGGCGGTGACCG AGATCCTGGTCAATGGCCCGCACCGGGTGTTCGTCGAGCGCGAGGGCGTGCTGCACCAGAGTGACTTGCGCTTCATCGACGCCCACCATGTGGAGCGGGT GATGCAGCGAATTCTCGCGCCCCTGGGCCGCCGCCTCGACGAGTCCTCGCCAATGGTCGACGCCCGCCTGCCGGACGGCAGCCGGGTCAATGCAATCATC
|
|
| Amino Acid Sequence |
>pilus assembly protein
MSQSLSQTFLAITRNSTDLEWLQGALAPLGQVVGTAGSLDELLALVDVTFANLVFVGLDREHVVAQAALIEGALEAKPMLAIVALGDGMDNQLVLNAMRA GARDFVAYGSRSSEVAGLVRRLSKRLPAVTPSTQLGGLTVLYGTQSDGDGALLAGHLALVVQKSGQQTLLLDLGLPRGDSLALMGLESSFHFGDALRHLR RLDATLIDSAFTSTDSGLRILAYASHDEPLEHTSAAELYMLLSALRQHFQHIVVNLAGQPDSEALRTFVSHCDKLLWRTDQSVLDCRRNLTVLNHWREKG MKLEHARLLVDRYLRAVAPDSETLGKTFALEVIAVLAYSPEVRLNAKNQGVSLFELAPREALTQSLKTLGERLAKRSEGLPQPKAGWLNRIMGGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|