Pseudomonas sp. PH1b, U873_RS0122885
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGCATGACGGCCTTCGTCTGTGACTACCTGCGCATCATGTCCTCCGGCAACATGGCCCCCCACGAGCTGGAAGGCCTGTTCGACATGGAACTGTTCAG CCTCAAGGAAGACCTTGAGCATCCTTCCCACGCGGTCAACGGGATCGCCGACGGCATGCCGGGTTTCGGTATCGTCGCGGCCGTACTGGGGATCGTGGTG ACCATGGCGTCCCTGGGGGACGGCGACCAGAAGTCCATCGGCCTGCACGTAGGTGCGGCCCTGGTGGGTACCTTCTTCGGTATTCTCGCGGCCTATGGTT TCTTCGGCCCGCTGGCTCATTCCCTGGCCCACGACGCCAAGGAAGAGCTGAATGTCTACGAGGCCATCAAGGCGTCCCTGGTGGCTTCGGCCTCCGGCAT GCCGCCTTCGCTGGCGGTGGAGTTCGGGCGCAAGGTTCTGTATCCAGCGCACCGTCCTAGCTTCGCCGAGCTGGAACAAGCGGTCCGCGGTCGCTAAGTC
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| DNA Sequence for Gene |
>U873_RS0122885
ATGGAAAATAATCAGCCGATTATCATCAAGCGCGTCAAGCGCTTCGCTGGCGGACATCACGGAGGCGCCTGGAAAATCGCCTTCGCCGACTTCGCCACGG CGATGATGGCGTTCTTCCTGGTGCTGTGGCTGCTGTCCACGGCCACCCCGGAGCAGAAGATCGCCATCGCCGGTTACTTCAAGGACCCGATCGGCTTCTC GGAAAGCGGCACGCCCTACATCATTGACCTGGGTGGTTCCCCGGAACTGGCGCCGGACAACACCCTCAACCCCGAGATCAAGTCCCAGCCACAGCCGGAC AAGGTCACGGTGGACGCCGATCAGGTGGAGGGCATGGCCGAGCAAGTGGAGCGCGAGCGCCTGGAACTGTTGCTGCAGGAGCTGCAGAACAAGGTCGAAG AGAACCCCCAGCTGCAGAAGTTCAAGGACCAGATTCTCTTCGAGATCACGCCGGACGGCCTGCGGATCCAGATCATCGACTCCGAGAACCGGCCGATGTT CGACTCCGGCAGCGCACGCCTGAAACCGTACTTCGAGGACATCCTGCTGGCCATGGCCGACACCATCAAGGCGGTGCCGAACAAGATCAGCATCAGCGGC CACACCGATGCCAAGCCTTACTCGGGCAGCGGTGATTTCGGCAACTGGGAGCTGTCTGCCAACCGTGCCAACGCTGCGCGTCGGGCTCTGGTGGCTGGGA GTTATCCGGATGCCCAGGTTGCTCGTGTCGTGGGGTATGCCTCCTCGTCGCTGTTTGATCGCCAGGACCCGTTCAACCCGATCAACCGCCGTATCGACAT CGTGGTGCTGACCAAGAAGGCTCAACGCGCCATCGAGGGTGAAGGTGCTCCCGAGGCACCCGTACCGACCCAGGGTACGGGAGCGCCGGGCGAGGTTCCG GCGGATCCGAACGCCCTGCCGCCGGAGCAGGAGCCGTTGCCGGCCCACGAGCTGCGCGAGCGCTTGAATATCTTCGATGATCCGGCGCCGAAACCCGCCG AGCCGCCGAAGCCCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGACAAAAAAGCCGACTGTGAGGTCGGCTTTTTTGTGGGCGCTGGCAGGCTCGGAAGAGCCTGACGGATCTGGGGCTTGAGGTGTTGTAGAGGTGCTTG GCATGGGCCGCTGTCGGCCCGGAGCGAAGGTCGAGGGTAACTCCGCGCAGGCGCGGAGTTACGGGCGGCGGCTCAGTAGCTGCTGTCAGGCAGGCTGGCG AGGATCGAGCGGTAGCTGTTCATCCGCTGTTGCTGGATGCGTCCGTCTTCCAGGGCCTTGAGCAGGGCGCAGCCTGGCTCGCGGTCGTGCTTGCAGTCAC GGAAGCGACAGGTGCCCAGCAGGTCGTTGAACTCGATGAAACCAGCCTCGACATCGGCCCGGCTGACATGGCCCAGGCCGAACTCGCGGATACCGGGAGA GTCGATCAGCTCGCCGCCACCGGGGAAGTGGAACAGTCGCGCGGTGGTGGTGGTGTGGGTGCCCTGGCCGGAGAACTCCGACAACGGCCCGACCCGGGTT
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| Amino Acid Sequence |
>flagellar motor protein MotB
MENNQPIIIKRVKRFAGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFKDPIGFSESGTPYIIDLGGSPELAPDNTLNPEIKSQPQPD KVTVDADQVEGMAEQVERERLELLLQELQNKVEENPQLQKFKDQILFEITPDGLRIQIIDSENRPMFDSGSARLKPYFEDILLAMADTIKAVPNKISISG HTDAKPYSGSGDFGNWELSANRANAARRALVAGSYPDAQVARVVGYASSSLFDRQDPFNPINRRIDIVVLTKKAQRAIEGEGAPEAPVPTQGTGAPGEVP ADPNALPPEQEPLPAHELRERLNIFDDPAPKPAEPPKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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