Pseudomonas sp. PH1b, U873_RS0121995
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CACGGCAAACCCATCCTGCAATTCGGCAAGCTCGGCGTCGGCCTGAGCAAGATCGAACCGGCCGGCCAGTACGCACTGAAATTGACCTTCGACGACGGCC ATGACAGCGGACTGTTCACCTGGGACTACCTGTATCAGTTGGCACTGCGCCAGGAAGACCTGTGGAACGACTATCTGGCCGAGCTGAAGGCCGCCGGAAA AACCCGCGATCCCCATCAGTCCGTCATCAAGCTGATGCTCTAGCTCAAGCCTCCAGTTGTTTAGAGGGCATTTTCTAATTCCATCTGTTTGAATGCGTGG CGGTATGGCCAATGAATGGCCTGCTTGCGAAAAAAATTAAACTCGGGTAACCAATGGATCTGGCAAGTTCCCTGCAGAGCTTTGCCAACCAAAAAGCAGC GGTGCGCAATCAACGGTTACCCGAGCAGTAGTACCTGGCGTCGTGCTGTGTGACTGCACAGCAGGTCCGGTACTCGTCTCAGGACAATGGAGCGTCGTAG
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| DNA Sequence for Gene |
>U873_RS0121995
ATGAGTAACAAGAATAACGATGACCTGAAACGCCAAGCCTCGGAAAACACCCTGGGGCTCAATCCAGTCATCGGCTTGCGTAGAAAGGACCTGCTTACCT CTGCTCGTATGGTGCTTGCCCAGGCCATCAAACAACCCATCCACAGCGTCAAGCATGTCGCGCACTTCGGCCTTGAACTGAAGAACGTGATGTTCGGCAA ATCGACCCTGCAGCCGGAGGGCGACGACCGTCGCTTCAGTGATCCGGCCTGGAGCCAGAACCCGCTGTACAAACGCTACCTGCAGACCTACCTGGCGTGG CGCAAGGAGCTCCACGACTGGATCGGCGACAGCAGCCTGTCGGAACAGGACATCAGCCGCGGGCACTTCGTGATCAACCTGATGACCGAAGCCATGGCCC CGACCAACAGCGCGGCCAACCCTGCCGCGGTCAAGCGCTTCTTCGAAACCGGCGGCAAGAGCCTGCTGGACGGCCTGTCCCACCTGGCCAAGGACCTGGT GCACAACGGCGGCATGCCCAGCCAGGTCAACATGGACGCCTTCGAAGTGGGCAAGAACCTCGGCACCAGTGAAGGCGCGGTGGTGTTTCGCAACGACGTG CTGGAGCTGATCCAGTACCGGCCGATCACCGAGCAGGTGCACGAGCGCCCGCTGCTGGTGGTGCCGCCACAGATCAATAAGTTCTATGTCTTCGACCTCA GCCCGGACAAGAGCCTGGCGCGCTTCTGCCTGCGCAACAACGTGCAGACCTTCATCGTCAGCTGGCGCAACCCTACCAAGGCGCAACGGGAATGGGGCCT GTCCACTTACATCGAGGCCCTGAAAGAGGCCGTCGACGTGGTCACCGCGATCACCGGCAGCAAGGACGTGAACATGCTCGGCGCCTGCTCCGGGGGCATC ACCTGCACCGCGCTGCTGGGCCACTACGCCGCGTTGGGAGAACAGAAAGTCAATGCCCTGACCCTGCTGGTCAGCGTGCTCGACACCACCCTGGATACCC AAGTGGCGCTGTTCGTCGACGAACAGACCCTGGAGGCGGCCAAGCGCCACTCCTACCAGGCCGGGGTTCTGGAGGGACGCGACATGGCCAAGGTGTTCGC CTGGATGCGCCCCAACGACCTGATCTGGAACTACTGGGTCAACAACTACCTGCTGGGCAACGAACCGCCGGTGTTCGACATCCTGTTCTGGAACAACGAC ACCACCCGCCTGCCCGCGGCGTTCCACGGCGACCTGATCGAGATGTTCAAGAACAACCCGCTGACCCGGGCCGATGCACTGGAAGTGTGCGGCACGCCAA TCGACCTGAAGCAGGTGACCGCCGACATTTTTTCCCTGGCCGGCACCAACGACCACATCACCCCGTGGAAGTCCTGCTACAAGTCGGCGCAACTCTTTGG TGGCAATGTGGAGTTCGTGCTCTCCAGCAGCGGCCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCCAAGGCGCGCTACATGACCAGCACCGAGATT CCCGCCTGCCCTGACCAGTGGCAGGAAAACTCGGTGAAGCACACCGACTCCTGGTGGCTGCACTGGCAAGCCTGGCAGGCGGAGCGCTCGGGCGAACTGA AGCCGGCACCGAGCGTGCTGGGCAACAAGAAGTACGCGGCCGCCGAGGCGGCACCGGGAACCTACGTCCACGAACGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACCCGATTTTGCATGATGCGGCACCAGGAGGTGCCGCCACGCCCTATTCTTGGTACGAGGCCAGGCCTCAGGAAATCCGGATGTCGCCCGGGACGGCGC CTCCAATGGTTCAATTCACAGGGCTACGGCATGCCACATTCCTTTATCTTCCGCACCGTCGACCTGGATGGCCAGACCATCCGTACCGCGGTACGTCCCG GCAAGCCTCACTTGACGCCCTTGCTGATCTTCAACGGTATCGGCGCCAACCTGGAGCTGGTGTTCCCCTTCGTCCAGGCCCTGGACCCGGATCTGGAGGT CATTGCCTTCGATGTGCCGGGTGTTGGCGGATCCTCGACCCCAAGCCATCCCTACCGGTTCCCTGGCCTGGCCAAGCTGACCGCGCGGATGCTCGACTAC CTGGACTACGGCCAGGTCAATGCCGTCGGTGTGTCCTGGGGTGGAGCGCTGGCCCAGCAGTTCGCCTACGACTACCCGGAGCGTTGCAAGAAGCTGGTGC
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MSNKNNDDLKRQASENTLGLNPVIGLRRKDLLTSARMVLAQAIKQPIHSVKHVAHFGLELKNVMFGKSTLQPEGDDRRFSDPAWSQNPLYKRYLQTYLAW RKELHDWIGDSSLSEQDISRGHFVINLMTEAMAPTNSAANPAAVKRFFETGGKSLLDGLSHLAKDLVHNGGMPSQVNMDAFEVGKNLGTSEGAVVFRNDV LELIQYRPITEQVHERPLLVVPPQINKFYVFDLSPDKSLARFCLRNNVQTFIVSWRNPTKAQREWGLSTYIEALKEAVDVVTAITGSKDVNMLGACSGGI TCTALLGHYAALGEQKVNALTLLVSVLDTTLDTQVALFVDEQTLEAAKRHSYQAGVLEGRDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIEMFKNNPLTRADALEVCGTPIDLKQVTADIFSLAGTNDHITPWKSCYKSAQLFGGNVEFVLSSSGHIQSILNPPGNPKARYMTSTEI PACPDQWQENSVKHTDSWWLHWQAWQAERSGELKPAPSVLGNKKYAAAEAAPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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