Pseudomonas sp. PH1b, U873_RS0120510
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCAGGCCAGCGGCGACATCCTCGCCATCGCCACCCTGATGGGCATTGTCGGCGCGCTGTGCGCCACCCTCTGCGGCGACCGCCTGCCACGCAGCATCCT GTTGCTGCTGGGCTACGGCCTGATGGCGGCCTCGGTGCTGCTGCTCCTGGGACAACCGCAACTGGCGCGCTTCGCCCTGGCGGCGCTGGCGTTCAAGTTC ACCTGGACCTTCATCCTGCCGCTGATCCTCGCGCGCATGGCCCAGATGGACCGCAGCGGCCGGCTGATGAACGCCTCCAACCTGGTGATCAGTGCCGGCC TGGCCATCGGCCCGACCCTGGCCGGGCGCCTGATCGAAAGCAGCGGCGGCTTCCAGCAACTGCTGTGGGCAGGCGCCGCGATCACCCTGGTGTCCCTGGC CCTGGTCCTTGGCTGCCGGCCCACTCACTGAATGACCTGCCCCGTCGGGGCCCGCCGGGCGCTCCAGACGCCACTGTTTCCTTGAACGATGGATATCGCC
|
|
| DNA Sequence for Gene |
>U873_RS0120510
ATGACCTGCAAAACCGCTTTTTTCTTCGATGAACTCTGCCTGTGGCACAGCGCCGGCCTGCACAGCCTGACCCTGCCGGTGGGTGGCTGGGTGCAGCCGC CGGCCGCCGCCGGACATGCCGAGTCACCGGAGACCAAACGCCGGCTGAAAAGCCTGATGGATGTTTCCGGGCTGACCCGGCAATTGCACCTGCGCAGCGC CCCTGCGGCCACCGAGGAAGACCTGCTGCGCGTCCACGGCGCCGACTACCTGCAACGCTTCAAGGCCCTGAGCGATGCCGGTGGCGGCCACCTGGGGGAC GAGGCACCGGTGGGCCCGGGCAGCTATGAAATCGCCAAGTTGTCGGCCGGGCTGGCCATGGCCGCCGTGGACGCGGTACTCAGCGGCGAGGTGGACAACG CCTATTCCCTCTCCCGTCCACCGGGCCATCACTGCACCGCCGACCAGGCCATGGGGTTCTGTTTCCTGGCCAATATCGCGATTGCCATCGAGGCCGCCAA GGCCCGCCGCGGGCTGGGCAAGGTGGCGGTCATCGACTGGGACGTGCATCACGGCAACGGTACCCAGTCGATCTTCGAGGAGCGCGCCGACGTGCTGACC CTGTCCCTGCACCAGGACGGCTGTTTTCCTCCGGGCTACGGCGGCGAGCAGGATCGCGGGCGCGGCGCCGGCCTGGGCTGCAACATCAATATCCCGCTGC TGCCCGGCAGTGGCCACGACGCCTACCTGCAGGCGATGCAGCGCATCGTGCTGCCGGCCCTGGAGCGCTTCGAGCCGGAACTGATCATCGTCGCCTGCGG CTACGACGCCAATGCCGTCGACCCGTTGGCGCGGATGTTGCTGCACAGCGACTCCTTCCGTGAAATGACCCAGTGCCTGCGGGACGCCGCCGAGCGCCTG TGCGCCGGGCGCCTGGTGCTGGTGCATGAAGGCGGCTACTCCGAGGCCTATGTGCCCTTTTGCGGGCTGGCCACCCTGGAGGCGCTGTCGGGCATTCGCA CCGCGGTCGACGACCCGATGCTGGCGTTCGTGCGTCAGCAGCAACCCAAGGCCGACCAGGTGAACTTCCAGCGCCAGTTGCTGGAGCGCCAGGCCCAAGC CATAGAGGCTGCCGCTGGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCCCGTCGAACGGGTGGCTGCCGATCCTCGGCCGCCACCTGGCCGTCTGCATCCTTCCTCCTGCCTCTGGCCGCAACGGCCTCTTCAACCACCTGCCGG CTCGCCCAATCGTGCTGCAGGAGCCGGCTTGGCGGCGCAGGCATCCTCCCTGTTTCGGACATTGGTCTCGGCAAAGCTGAAAGGTTTCCTATCCTCTCCT CAGCTACATGATCGTCAGGCCCAGCACCTCAATACCTAATAACCCTGCGTGCCGCTGCGCCCCTTGCCTCGAAGGCCGGGTGAACTGCGCGCAGGGGCCT GTCTGTCTGCTTGTCCGACCCCCTCGATGCCGGCGCCGTCCGGCAACGGGTCATTGGTGTTCCCGCTAAGACAAAGGAGATGTCCATGCACCGCAAGACC AAGGATTACCTCGACGAGATCAGCTTCTGGCACTGCGCCCGGAGCCGATTGCTGCATCGCGCGGCCCAGCTCCGGCATAACCCCGAAGCGCCAGTGCAAC
|
|
| Amino Acid Sequence |
>acetoin utilization protein
MTCKTAFFFDELCLWHSAGLHSLTLPVGGWVQPPAAAGHAESPETKRRLKSLMDVSGLTRQLHLRSAPAATEEDLLRVHGADYLQRFKALSDAGGGHLGD EAPVGPGSYEIAKLSAGLAMAAVDAVLSGEVDNAYSLSRPPGHHCTADQAMGFCFLANIAIAIEAAKARRGLGKVAVIDWDVHHGNGTQSIFEERADVLT LSLHQDGCFPPGYGGEQDRGRGAGLGCNINIPLLPGSGHDAYLQAMQRIVLPALERFEPELIIVACGYDANAVDPLARMLLHSDSFREMTQCLRDAAERL CAGRLVLVHEGGYSEAYVPFCGLATLEALSGIRTAVDDPMLAFVRQQQPKADQVNFQRQLLERQAQAIEAAAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|