Pseudomonas sp. PH1b, U873_RS0119395
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCAAGATGCTCAGCACCCGTGCGGGGAGCGTGCAAACGCTGTCCGACTACGGGTTACCCGATCTCAACGACATGCGCTTGAGCTTGCACGATGCCCTGA GCCAGGCCCGTCAGGCCATCGAGCATTTCATCGAAGCCTACGAGCCGCGGCTCAGTCAGGTGTGTGTCGTTTCCCTGCCGCGTGATCATGATCCGCTCAA GCTGGCCTTTCGCATTGAAGGCTTGCTTGAGGTGGAAGGGATCAAGCGCCAGGTCAGCTTCGGCGCCTGCCTGGATGGCAGCGGACAGGTCAGGGTCAGT TGAGGAAATGACGATGACAGGCAACCCCGCAGTCTGTGCCGGTCGGCCTTTTGGCGGCCCGACCCAAGACCTTTGTTGGACCTACCGTTCGCGGCGTGAA CACGGCAGGGGTCACTGGCGAGTGGCGTGACGCGGCCTGGGCACTGGCCGCTGCGTTCCAGCGAAATCACCCATGACTCCTACTATCAGGCAATCAGCCC
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| DNA Sequence for Gene |
>U873_RS0119395
ATGTCCTTTAACCACTATTACCAAAGCGAGCTCACTGCGCTGCGCCAGCTGGGCCGGCGTTTCGCCGAGCGCAGTCCGGCCTTGGCGCCCTTTCTCGGGC AGGCCGGACGCGATCCGGATGTGGAGCGCCTGCTTGAGGGCTTTGCGTTCCTGACGGGGCGTCTGCGCCAGAAGCTCGATGACGAGTTGCCTGAGCTGAG CCACTCGTTGATGCATCTGCTGTGGCCGAACTACATGCGGCCATTGCCGGCGTTCAGCATCTTGCAGTTCGATCCCTTGCAGCAGTCCGGGCCGGCCCAG CAAATACCGCGAGATACGCCGGTAGAGAGCAAGCCCATCGATGATGTCTGCTGTCGTTTTCGCACCTGCTATCCGACTGAGGTGCTGCCTCTCGACCTGA CAGCATTGAGTTATTCGGTCAAGGGCGACGGTGCGCTGTTGAGCCTGCGTCTGGAAATGAGTTGCGACGGTCATATCGGTGAACTGAACCTGGAGCGTCT GCGCCTGCACCTGGCCGGTGAGCGCTACATCAGTCAGATGCTTTACCTCAGCCTGTTGCGCAACCTTGAGGGCATTGAGCTGGTGCCATTGGGGGAGGGC GGCGAGCCGGTCGCCGGGGCCAACGGCTCCGGGATGTCCTTCAAGATACCGGGCAGTCGTGTGCAGCCTGTGGGCTTTGCTGAGGAAGAGGCGTTGATCC CGTACCCGCTGAATACCTTCCGCGGTTATCGCTATCTGCAGGAGTATTTTGCGTTCCAGGACAAGTTCCTGTTCGTCGATCTGGGCGGCCTGGATCTGCT GCAGCGGTTGCCGCGAGACGTTCTCCAGCGCATGCGCGGCCTGGAGTTGCGCTTCGATATTCGCAACAGTGGGGTACAGCGCCTGCGTCCGACCCTGGAC AACGTCAAGCTCTACTGCACACCTATCGTCAATCTGTTCAAGCACGATGCCCTGCCGATTCGTCTCGATGGCAAGCAGGACGAGTACCTGTTGCTACCAG CCAAGTACGACCTGGAACATTGCGGCGTGTTCTCCATTGAAAGCGTCACCGGCTGGAGGCCGGGCGGCCTGGGTTATCAGACGTATGTGCCCTTCGAGTC GTTCGAGCATGATCCGAGTTTCGACGTGCCGCACAGCCGTCCGCACTACAGCATCCGCCAGCGCTCATCGTTGCTGCACGATGGTCTCGACACCTACCTG AGCTTCGGTATCCGCCATACCGATGCCCAGGAAACCCTGTCGATCGAGCTGATGTGCACCAACCAGAACCTGCCACGCCGGCTCAAGCTTGGCGACATCA ACCAGTTGTGCGAGCAAACCCCGGAGTTCCTCAGCTTTCGCAATATCACACCGGTCACCTCCAGCTACGCACCGCCGTTGAACCGCGATTTTTTGTGGAA GCTCATCAGCAACATGTCGCTCAACTACCTGTCGCTGGCCAACGTCGATGCGTTGAAGGTGATCCTCGAAACCTACGACTTGCCACGCTACTACGACCAG CATCTGGAGAAGGTCAGCAAGCGTTTGCTGGGCGGGCTCAAATCGATCCGCCACGAGCACGTCGATCGCCTGCACCGAGGTTTGCCGCTGCGCGGGTTGC GCACCGAGCTGAGTATCGATCCCCAAGGCTATATCGGTGAAGGCGACCTGTTCGTTTTCGCGTCGGTTCTTAACGAGTTTTTTGCTCTTTACGCCAGTCT CAACTCCTACCACGAGCTGCGGGTAAAAAGTACACAGGGAGAGGTGTACAAATGGGCACCACGCATGGGGCTGCAGCCCCTGCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGACTGAGCACGGTAATACGAGAGTACTCGCTGTTCCAGGCCGTACTGTTGGTCGTCGATCGCTTGCGCGATGCCCACCCGCACCTGAGCGAAGAGGA ACTCTACGATCAGCTGGAGTTCCAGGCCAATCCGAGCCTGGGTTTCCCTGGCAGCGATGTCGATCGCGTGGAGTTTTTCGACGAGTGCGGTCAGCTGCGT GCGCGTTTGCGTTTCAACCTGAGCGGGTTGTTCGGCGCGGGCTCGCCCTTGCCGGCGTTCTATGGCGAGCAGGCCTTGGGTGATAGCGAAGAGGGCAACC CTACGCGCAACTTCCTCGATCTGTTCCATCATCGCCTGCAGCGCCTGATGCTGCCGATCTGGCGTAAATATCGCTACCGCGCCAGCTTCAAGAGCGGTGC CCTGGACCCGTTTTCAGCTCAGTTGTTTGCCTTGATCGGCCTCGGCGGCGAAGACATCCGCAAGGCCAGGGAACTGAATTGGAAACGCTTGCTGCCGTAT
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| Amino Acid Sequence |
>type VI secretion protein
MSFNHYYQSELTALRQLGRRFAERSPALAPFLGQAGRDPDVERLLEGFAFLTGRLRQKLDDELPELSHSLMHLLWPNYMRPLPAFSILQFDPLQQSGPAQ QIPRDTPVESKPIDDVCCRFRTCYPTEVLPLDLTALSYSVKGDGALLSLRLEMSCDGHIGELNLERLRLHLAGERYISQMLYLSLLRNLEGIELVPLGEG GEPVAGANGSGMSFKIPGSRVQPVGFAEEEALIPYPLNTFRGYRYLQEYFAFQDKFLFVDLGGLDLLQRLPRDVLQRMRGLELRFDIRNSGVQRLRPTLD NVKLYCTPIVNLFKHDALPIRLDGKQDEYLLLPAKYDLEHCGVFSIESVTGWRPGGLGYQTYVPFESFEHDPSFDVPHSRPHYSIRQRSSLLHDGLDTYL SFGIRHTDAQETLSIELMCTNQNLPRRLKLGDINQLCEQTPEFLSFRNITPVTSSYAPPLNRDFLWKLISNMSLNYLSLANVDALKVILETYDLPRYYDQ HLEKVSKRLLGGLKSIRHEHVDRLHRGLPLRGLRTELSIDPQGYIGEGDLFVFASVLNEFFALYASLNSYHELRVKSTQGEVYKWAPRMGLQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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