Pseudomonas sp. PH1b, U873_RS0119375

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PH1b Contig11, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGAAGACTTCTGAGTTGAGTTCAGTATGGAGAGTAATTGCAGCGCCGGCTCCATTGTCAGTGGGATGTTAAATGTTCTGGCTGTTTTCTAAGTAACTCAT GTATGTGATTGATAAGTGTCAGCTAATTCAATCTGCTTGGCTGTGGGTCGGAAAATAACTTTGAACTGCGGTTCACGCTGCGGCCGGGCTTGGAGGGCGG GGGGAGAGGCCCTCAAACGTTGCGCCAGTGGCTGAGTGAATCTGTAGTGCTGCGAGTTTTTTGCCTTGGGCAACATGATGTGTCGAACCTGTATATCTGT GATAGCGCTCTGGATAGTTCGTTATCGTGATGAAGGCATGGACGGTTGCTGCGACGGGCTGTTTTTGGGGACAACAAATTTAGTTTGGGAATTATTCTCG TGACTTTAGGATTTTTCTTAAATTAATACCTCTGGCTTAGGGGGTATATTTTTTAAGCAATGGCCGCTTGTTCAGTGGCAAAGCTCTAAACAGGTCATGG
DNA Sequence for Gene
>U873_RS0119375
ATGAACTACTCAAATAAACTTTCTGCTCATTATCTTGAGATTGCCAAAGCCTCTATTTCCAAAGAGAGTTTTGCGGGCCCGGATGTTCGTTTTTCAAGTG AGTACGAAGCCCTTGAGCTCGAGTTGGGCAAAGCCCAGTCCATGCATGAAAGCGGTCAGATCGACTGGCTGAAAGTGCTTGAAAACAGTGAGGCGCTGCT CCGCGTCCAGTCCAAGGATCTGCGGGTGGCGGCCTGGCTCACCTGGGCGCTGTATCAGCGTGAGTCTTTCTCGGGGCTGCTGGCCGGTTGTGGCGTTCTG CAGTACATGTGTGAGCAGCACTGGGCCCAAGTGCATCCCCATAAATTGCGTACCCGTGCTGCCGCCATCAGTTGGCTGGTGCCCCGACTGGAGCAGGCGT TAAGCGAAAATATCGCGATCAAGGAGCAGTTATCGCTGTTTCGCCGGTTGCTGCTGCATTTGGAAAAGCTCGATACCGTACTGACTCAGCATCTTGGCGA TGATGCCCCCTTGCTGCTGCCCATCTGCCGGCGGCTGTCGAGCATGATCCAGCGTGCCGTCGAGCATCAGCCGGAAGCCGGCGCCGTGGGTGCGGTGGTC GCGCAGGTCAAGCAGGCCGCGACCCAGCTTTTCTCGGCGGCGGCGTTGATCGATAACGAAAAGGACGCGCAGAGGGTCCTGCGTGCACTGCAGGAACATG CTCGACCGCTATGCGCCTGGTGGCTCAGACAAAAGTCCACCGATGTGCGTTCCCTGCGCTTGAACCGCACCATGCTGTGGCTGCCCATCGATACCGTCCC AGAGCGTAACGCCGAACAGGTCACGGCATTGCGCGGGCTGCCGGGAGACAAGCTCAAGAGCTACCAGCAACGCTACGCCAGCGGTCAGTTCGCTGACCTG TTGCTGGAGCTTGAAGCCAGCCTGGCCAGGGCACCCTTTTGGTTCGACGGGCAGCGTCTGGTCTGGGAGTGCCTGCAGGAGTTGAACGCCGATCAGGCCA TGCGTGAGGTCGAGTTTCATTTTGCACTCTTGCTGCAGCGCCTGCCGGGGGTGGTCGAGTTGTGCTTTCACGACGGCACGCCCTTCGCCGATCCGGCCAC CCGCAGCTGGATCAGCGCCCATGTGATGCCCCACCTGTCCGCCAGCAGTGCGCCTCGTCAGGTCGAAGCCAGCGCCAGTCAGCCGGTTTGGGAAGAAGCC CTGGAAGAGGTTTTGCCGATCCTGCGCAAGGATGGCCTCAAGGCGGCCGTGCAGGTGCTCAAGCAGGGCTTGCAGAGCGCACGTGGCGGTCGCGTGAGGT TCTTCTGGCATTTCAGCCTGGCGCGGCTGTGTTTCATCGCCAAGAAGTACGAGCTGGCCAAGACCCAGCTCGAGACCCTTGATCAAGAGTTGCAGCACTC AGGCCTGCACGCCTGGGAGCCGGATCTTGCGTTGGAAGTGCTGCACCTCCTGCATAACTGCTGTGAGTTGTTGCCGCAGAACCACGCAGTGCGAGAACGC AAGGAAGAGATTTATCGCAGGCTGTGTCATCTCGACCTCGAGGTGGTACTCGAATAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCCCAGGGCCGACAACGCAAGGAAAGACCCCATGGCCAAAGAAGGCTCTGTAGCCCCAAAGGAACGTATCAACGTCACCTTCAAACCCGCAACCGGCGG CGCTCAGGAGGAGATCGAACTGCCGCTGAAACTATTGGCGATCGGTGATTACACCCAGCGCCCGGACGAACGCAAGGTAGAAGATCGCAAGCCGATCAGT ATCGACAAGATGACCTTCGACGAAGTGTTAGCCAAACAGGAATTGAGCCTGACGCTGAGCGTGCCCAACCGCCTTCAGCAGGACGCTGACGCCGATGAGC TGGCCGTCAGTCTGCGGGTCAGCTCGATGAAGGACTTCAACCCGGCCAGCCTGGTAGAGCAGGTGCCCGAGCTGAAGAAACTGATGGAACTGCGCGATGC CCTGGTGGCGCTCAAGGGACCGCTGGGTAACGCACCGGCGTTTCGCAAAGCCATCGAAGGCGTGCTCGCCGACGATGAATCCCGGGTGCGTGTGCTCGGT
Amino Acid Sequence
>type VI secretion protein ImpA
MNYSNKLSAHYLEIAKASISKESFAGPDVRFSSEYEALELELGKAQSMHESGQIDWLKVLENSEALLRVQSKDLRVAAWLTWALYQRESFSGLLAGCGVL QYMCEQHWAQVHPHKLRTRAAAISWLVPRLEQALSENIAIKEQLSLFRRLLLHLEKLDTVLTQHLGDDAPLLLPICRRLSSMIQRAVEHQPEAGAVGAVV AQVKQAATQLFSAAALIDNEKDAQRVLRALQEHARPLCAWWLRQKSTDVRSLRLNRTMLWLPIDTVPERNAEQVTALRGLPGDKLKSYQQRYASGQFADL LLELEASLARAPFWFDGQRLVWECLQELNADQAMREVEFHFALLLQRLPGVVELCFHDGTPFADPATRSWISAHVMPHLSASSAPRQVEASASQPVWEEA LEEVLPILRKDGLKAAVQVLKQGLQSARGGRVRFFWHFSLARLCFIAKKYELAKTQLETLDQELQHSGLHAWEPDLALEVLHLLHNCCELLPQNHAVRER KEEIYRRLCHLDLEVVLE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site