Pseudomonas sp. PH1b, U873_RS0116435
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGAGCAATGGACTCCGCCGCCCCAGCAGCACGCAGCGGCTGTGGTTCCCGTACAAGTGAAAAACACCGCAGCAGCCTCTGGCCAGTATCTGCAGGTGG GCGCCTTCGCCAACCCGGACGCTGCCGAGCTGTTGAGGTCGAAACTGAGCGGAATGGTGAGCGCCCCGGTGTTCATCAGCTCGATCGTGCGTAACCAGCA GACGCTGCACCGAGTGCGCCTGGGGCCATTCGGTACGCCGAGTGAGGCCCAGCAAGCACAGAACAGCGTGCGCCTGGCCAACCTGGGCCAGCCGAGCGTG GTCACTGCCGAGTAGCAGTACTGAAGATTGAAGGTCCGCTTGCGGTATTGGGGGGCGGACCCGGGTTGTTGGCTCGTCGAACAACAAAAGCCCGGCAAGG GCCAGTGAGTGAGCAACTGCACACGCGATAGCCCTTCAGAAGGCTGTCTGAAATAGTTTTGCCCCTAGGGCAAGTTTCCATTAGCAACTTCGAGAGACGG
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| DNA Sequence for Gene |
>U873_RS0116435
ATGAACATCACCACCTTTGCCAAACGCCTGTGCCTGCTTGTCCCGCTGATCATCACGCCCGCCGCCTGGGCGGTCGAAGCGATGCCGTCGCCACCGCAAC TGGCTGCCAAATCCTATGTGCTCATGGATGCCAGCAGCGGTAACGTGCTGGTGGAGAACAATGGTGACCAGCGTCTGCCGCCGGCCAGCCTGACCAAGCT GATGACCGCCTACATCGCGACCCTGGAAATCCGTCGCGGCCAGATCGGCGAGAACGATCCGGTGACCGTCAGCGAGAACGCCTGGCGTACCGGCGGTTCG CGGATGTTCATCAAGGTCGGCTCGCAAGTCACCGTCAGCGATCTGCTGCACGGCATCATCATCCAGTCGGGCAACGACGCCAGCGTCGCGGTTTCCGAGC ACATCGCCGGCAGCGAAGACGCCTTCGCCGACATGATGAACAAGACGGCAACCGACCTGGGCATGAGCAACAGCCACTTCATGAACCCTACCGGCCTGCC GAACCCCGAGCACTACTCGTCGGCCCACGACATGGCGGTACTGGCTCGCGCGATCATTCATGAAGATCCGGCCCACTACGCGATCTACTCGCAGAAAGAG TTCTTCTGGAACGGCATCAAGCAACCCAACCGCAACCTGCTGCTGTGGCGCGACAAGACCGTTGATGGCCTGAAGACCGGCCACACCGACGAAGCCGGCT ACTGCATGGTGTCTTCGGCGGTACGTGACGGCATGCGCCTGATCGCCGTGGTGTTCGGCACCAACAGCGAACAAGCTCGTGCTGCCGAGACCCAGAAGCT GCTGACCTACGGTTTCCGTTTCTTCGAAACCCAGACCTTCTACCAGAAGGGCACCGAGCTGGCCCAGGCTCCGGTCTGGAAGGGCACTACCCACCAGGTC AAGGCCGGCTTGGCTGAAGATCTGACCATGACCATGCCTAAAGGCCAGCTTAAGAAACTGGCTGCGAGCATGACCATGAACCCGCAACTGGTCGCGCCGA TCGCCAAGGGCGACGTGATTGGTAAGGTCGAAGTGAAGCTGGACGACAAGGTGGTGCACAGCGCCGACTTGATCGCTCTGGAAGCGGTCGACGAAGGTGG TATCTTCCGCCGCATGTGGGATAGCATCCGTCTATTCTTCTACGGCTTGTTCAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TATTGTCGACCCGCATGGCCCTCGCTCTGAAGTAGAGCGGGGGTCGTGTTCGTCGCCACGGCTTACGAGGCCGTTACTGCCATGACAGACACTGACGTTA AGTCGCACAAGATTGAATTTCCCGTCGACGACTATCCGATCAAGGTGATCGGTGACACGGTTGTCGGCTTCAAGGACACCGTGATCGAGATCCTTGCCAA GTACGCCACCCTGGATATCAAGTCCCTGGCCGAGCGTCAGAGCAGCAACGGCAAGTACACCACGGTACAACTGCACATCACCGCCACCGGTGAAGACCAA CTGCGTGATATCAATAGTGCCCTGCGTGCTACCGGTGTCGTCCACATGGTGCTGTGATGCCACAGACGCTGGGCTTTCGTGAGCTTGGCCAGATGGCTTA CGAGCCGGTCTGGCAGGCCATGCAGCGCTACACCAATGAACGCGGTACCGATGCCGCGGACGAAATCTGGCTGGTACAGCATCCGCCGGTCTTTACCCAG
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| Amino Acid Sequence |
>D-alanyl-D-alanine carboxypeptidase
MNITTFAKRLCLLVPLIITPAAWAVEAMPSPPQLAAKSYVLMDASSGNVLVENNGDQRLPPASLTKLMTAYIATLEIRRGQIGENDPVTVSENAWRTGGS RMFIKVGSQVTVSDLLHGIIIQSGNDASVAVSEHIAGSEDAFADMMNKTATDLGMSNSHFMNPTGLPNPEHYSSAHDMAVLARAIIHEDPAHYAIYSQKE FFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQTFYQKGTELAQAPVWKGTTHQV KAGLAEDLTMTMPKGQLKKLAASMTMNPQLVAPIAKGDVIGKVEVKLDDKVVHSADLIALEAVDEGGIFRRMWDSIRLFFYGLFN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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