Pseudomonas sp. PH1b, U873_RS0113705

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00278	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00278	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006260	DNA replication	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00575	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003911	DNA ligase (NAD+) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00575	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF03120	NAD-dependent DNA ligase OB-fold domain	IPR004150	NAD-dependent DNA ligase, OB-fold	329	405	6.7E-35
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	324	397	6.6E-33
Coils	Coil	Coil	-	-	1	21	-
SMART	SM00278	HhH1_4	IPR003583	Helix-hairpin-helix DNA-binding motif, class 1	465	484	1.8
FunFam	G3DSA:1.10.150.20:FF:000007	DNA ligase	-	-	449	524	6.5E-30
Pfam	PF03119	NAD-dependent DNA ligase C4 zinc finger domain	IPR004149	Zinc-finger, NAD-dependent DNA ligase C4-type	414	453	8.7E-11
SMART	SM00292	BRCT_7	IPR001357	BRCT domain	707	784	2.6E-8
Gene3D	G3DSA:1.10.150.20	-	-	-	449	523	8.1E-29
Gene3D	G3DSA:6.20.10.30	-	-	-	398	448	3.9E-13
Pfam	PF01653	NAD-dependent DNA ligase adenylation domain	IPR013839	NAD-dependent DNA ligase, adenylation	4	324	2.3E-127
Gene3D	G3DSA:3.40.50.10190	BRCT domain	IPR036420	BRCT domain superfamily	699	783	3.0E-22
SMART	SM00278	HhH1_4	IPR003583	Helix-hairpin-helix DNA-binding motif, class 1	499	518	630.0
FunFam	G3DSA:3.30.470.30:FF:000001	DNA ligase	-	-	65	322	6.0E-108
Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	IPR001357	BRCT domain	707	778	4.6E-9
CDD	cd17748	BRCT_DNA_ligase_like	-	-	710	777	2.49882E-23
Gene3D	G3DSA:1.10.287.610	Helix hairpin bin	-	-	1	64	3.6E-27
PANTHER	PTHR23389	CHROMOSOME TRANSMISSION FIDELITY FACTOR 18	-	-	17	762	3.2E-49
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	326	406	4.63E-28
PIRSF	PIRSF001604	LigA	IPR001679	NAD-dependent DNA ligase	614	786	1.1E-30
SUPERFAMILY	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain	-	-	2	324	2.88E-118
SMART	SM00532	ligaN3	IPR013840	NAD-dependent DNA ligase, N-terminal	3	467	0.0
NCBIfam	TIGR00575	JCVI: DNA ligase (NAD(+)) LigA	IPR001679	NAD-dependent DNA ligase	11	596	0.0
Gene3D	G3DSA:3.30.470.30	DNA ligase/mRNA capping enzyme	-	-	65	322	1.7E-100
SUPERFAMILY	SSF47781	RuvA domain 2-like	IPR010994	RuvA domain 2-like	614	698	6.67E-13
SUPERFAMILY	SSF52113	BRCT domain	IPR036420	BRCT domain superfamily	708	783	8.6E-17
Pfam	PF12826	Helix-hairpin-helix motif	IPR041663	DisA/LigA, helix-hairpin-helix motif	529	592	4.1E-18
FunFam	G3DSA:1.10.287.610:FF:000002	DNA ligase	-	-	1	64	2.2E-28
PIRSF	PIRSF001604	LigA	IPR001679	NAD-dependent DNA ligase	1	604	0.0
Hamap	MF_01588	DNA ligase [ligA].	IPR001679	NAD-dependent DNA ligase	2	781	51.826286
FunFam	G3DSA:2.40.50.140:FF:000012	DNA ligase	-	-	324	397	8.6E-35
Pfam	PF12826	Helix-hairpin-helix motif	IPR041663	DisA/LigA, helix-hairpin-helix motif	628	683	4.2E-8
CDD	cd00114	LIGANc	IPR013839	NAD-dependent DNA ligase, adenylation	6	324	0.0
SMART	SM00278	HhH1_4	IPR003583	Helix-hairpin-helix DNA-binding motif, class 1	531	550	140.0
SUPERFAMILY	SSF47781	RuvA domain 2-like	IPR010994	RuvA domain 2-like	411	597	7.78E-50
Gene3D	G3DSA:1.10.150.20	-	-	-	524	603	1.6E-20
Gene3D	G3DSA:1.10.150.20	-	-	-	620	698	1.3E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.