Pseudomonas sp. PH1b, U873_RS0111070
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTCGGCCAGCGTTTCCTGGAGATCTGGTCGGGCCTGCCGGTGCTCTACCTGCTGATCATCCTCGCCAGCTTCGTGCAACCGAACTTCTGGTGGCTGCTG GGGATCATGCTGCTGTTCTCCTGGATGAGCCTGGTGGACGTGGTGCGCGCCGAGTTCCTGCGCGGGCGCAACCTGGAATACGTGCGCGCAGCCCGGGCCC TGGGCATGCAGAACGGGGCGATCATGTTTCGCCACATCCTGCCCAACGCCATGGTCTCCACCATGACCTTCATGCCCTTTATCCTCACCGGCGCCATCGG CACCCTGACCGCCCTGGACTTCCTCGGTTTCGGCCTGCCCCCCGGCGCGCCGTCCCTGGGTGAACTGGTGGCCCAGGGCAAGTCCAACCTGCAGGCGCCC TGGCTGGGCATGAGTGCCTTCGCCGTGCTGGCGCTGATGCTCAGCCTGCTGGTGTTTATCGGCGAATCCGCCCGCGATGCCTTCGACCCGAGGAAATGAC
|
|
| DNA Sequence for Gene |
>U873_RS0111070
ATGACCCAGGACAACCTGATCGAAGTCCGCGACCTGGCCGTCGAGTTCGTCACCGGCGACCGCGCCCAGCGGGTGGTGGAAGGCATCAGCTTCGACATCA AGCGCGGCGAGACCCTGGCCCTGGTGGGCGAAAGCGGCTCCGGCAAATCGGTGACCGCCCACTCGATCCTGCGTCTGCTGCCCTACCCCCTGGCTCGCCA CCCGAGCGGTAGCATCAACTATTCCGGGCACGACCTGCTGACCCTGAAAGAAAAGACCATCCGCCACATTCGCGGCAACCGCATCGCGATGATCTTCCAG GAACCCATGACCTCGCTGAACCCGCTGCACTGCATCGAGAAGCAGATCAACGAGGTGCTGGCCATCCACAAGGGCCTGACCGGCAAGGTGGCCACCCGGC GCACCCTGGAACTGCTGGAACTGGTGGGCATTCCCGAACCGCAGAAGCGCCTCAAGGCCCTGCCCCACGAGCTCTCCGGCGGCCAGCGGCAACGGGTGAT GATCGCCATGGCCCTGGCCAACGAGCCGGAACTGCTGATCGCCGACGAGCCCACCACGGCGCTGGACGTCACCGTGCAGTTGAAGATCCTCGAACTGCTC AAGGAGCTGCAGGCACGGCTGGGCATGGCCCTGTTGCTGATCAGCCACGATCTGAACCTGGTGCGGCGGATTGCCCATCGGGTCTGCGTCATGCAAAAGG GCTGCATCGTCGAGCAAGCCTCCTGCGAGGAGCTGTTTCGCGCGCCGCAGCACCCCTACACCCGGGAACTGCTGGCCGCCGAGCCCAGCGGCCTGCCGGC GGCCAATGAAGTCGGCCCGGCGCTGCTGCAAGTGGACAACCTCAAGGTCTGGTTCCCGATCAAGAAAGGGCTGCTGCGCCACACCGTGGATCACGTCAAG GCGGTGGACGGCGTTCACTTCAGCCTGCCCCAGGGCCAGACCCTGGGCATTGTCGGCGAAAGTGGCTCGGGCAAGTCGACCCTGGGGCTGGCGATCCTGC GCTTGATCGGCAGCCAAGGCGGCATTCGTTTCGAAGGCCAGCAACTCGACCAACTGTCGCAGAAACAGGTGCGGCCGCTGCGCCGGGAAATGCAGGTGGT GTTCCAGGACCCCTTCGGCAGCCTCAGCCCACGGATGAGCGTGAGCCAGATCGTTGGCGAGGGCCTGCGGATCCACCGGATCGGCACCGAGGCAGAGCAG GAACAGGCGATTGTCGACGCCCTCAAGGAGGTCGGCCTCGACCCGGCTACCCGAGACCGCTATCCCCACGAGTTCTCCGGGGGCCAGCGGCAACGGATCG CCATTGCCCGAGCCCTGGTGCTCAAGCCGCGGCTGATCCTGCTGGACGAGCCGACCTCGGCCCTGGACCGCACCGTCCAGCGCCAGGTGGTGGAACTGCT GCGCAACCTGCAACTCAAGTACAACCTGACCTACCTGTTCATCAGCCATGACCTGGCGGTGGTCAAGGCCCTGAGCCACCAGCTGATGGTGATCAAGCAC GGCCAGGTGGTGGAACAGGGTGACGCGCGCGGTATCTTTGCCGTCCCACAACATCCCTACACACGGCAATTGCTGGAAGCCGCGTTCCTGGCTCCGGCAA GCGCCGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCTGCAACAGGAGTAGCAACCTATGGGTTTTCTCGCTGGGAAGCGTGTATTGATCGTCGGCGTCGCCAGCAAGCTGTCGATCGCCTCCGGCATTGCCGCC GCCATGCACCGTGAAGGCGCCGAGCTGGCCTTCACTTATCAGAACGAAAAACTCAAGGGCCGGGTCGAGGAATTCGCCGCCGGCTGGGGCTCCAGCGCCG AGCTGTGCTTCCCCTGCGACGTGGCCAGCGACGAACAGATCGCCCAGGTCTTCAGCGAGCTGGGTAAACAGTGGGACGGCCTGGACTGCATCGTCCACTC CGTAGGCTTCGCCCCCGGCGACCAGCTCGAAGGCGACTTCACCGACGCCACCACCCGTGAGGGCTTTCGCATCGCCCACGACATCAGCGCCTACAGCTTC GTGGCCCTGGCCAAGGCCGGTCGCGAGCTGATGAAGGGCCGCAACGGCAGCCTGCTGACCCTGTCCTACCTGGGCGCCGAGCGCACCATGCCCAACTACA
|
|
| Amino Acid Sequence |
>microcin ABC transporter ATP-binding protein
MTQDNLIEVRDLAVEFVTGDRAQRVVEGISFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLARHPSGSINYSGHDLLTLKEKTIRHIRGNRIAMIFQ EPMTSLNPLHCIEKQINEVLAIHKGLTGKVATRRTLELLELVGIPEPQKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELL KELQARLGMALLLISHDLNLVRRIAHRVCVMQKGCIVEQASCEELFRAPQHPYTRELLAAEPSGLPAANEVGPALLQVDNLKVWFPIKKGLLRHTVDHVK AVDGVHFSLPQGQTLGIVGESGSGKSTLGLAILRLIGSQGGIRFEGQQLDQLSQKQVRPLRREMQVVFQDPFGSLSPRMSVSQIVGEGLRIHRIGTEAEQ EQAIVDALKEVGLDPATRDRYPHEFSGGQRQRIAIARALVLKPRLILLDEPTSALDRTVQRQVVELLRNLQLKYNLTYLFISHDLAVVKALSHQLMVIKH GQVVEQGDARGIFAVPQHPYTRQLLEAAFLAPASAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|