Pseudomonas sp. PH1b, U873_RS0110540

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PH1b Contig5, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCTGCCTGCTGAACGCCGATTGCCGGGTCCAGGTGCACCTGGACAGCGTCGCCCAGGCCCTGGAGAACCTGCTGCGCAATGCCATCCGCTACTCCCCCGC CGACGGCCGGGTGAGTTTGCGCGGCTGGCGCGAAGGCGCGTACTGGCACCTGTGCCTGGAAGACCAGGGCCCTGGCGTCGCCGAGCAGGACCTGCAACGC ATCTTCCAGCCCTACCAACGCCTGGACTCGGCCCAGGGCGACGGTTTCGGCCTGGGCCTGGCCATCGCCCGGCGCGCCGTCGAGCTGCACCAGGGGCGGA TCTGGGCCAGCAATGGCCAGCCCGGGCTGTGCATGCACCTGCTGCTGCCCGCCGCCTAGGCCCGGCAACAACCGCGCCTGCGCGCAAAACAGGCCTGGTC CAGGCCTGGAAGTGTTTAGAAAGTTAATGCGCTTTACTCGCAAATAGCAGTCATTATCATTCGTGATCTTCCTGTTTCTGCTTCTGTCCGGAGATCACCG
DNA Sequence for Gene
>U873_RS0110540
ATGTCCATGCGCTCGATGCGTCCTTTCGCCCCTTTCCTGCTGTCCGGCTGCTGCCTGCTCAGCCAGGCCGTGCAGGCTGCCAACGACGGCACGGCCCAGC CGGCCCTGGAGCTGGAACCGCAGTCGGTGATCGCCACCGCCAAGGAAGAAACCAAGCAGGCGCCGGGGGTCTCGGTGATCACCGCCGAGGACATCCAGAA GCGCCCACCGGCCAATGACCTGTCGCAGATCATCCGCACCATGCCCGGGGTCAACCTCACCGGTAACTCCACCAGCGGCCAGCGCGGCAACAACCGGCAG ATCGACATCCGCGGCATGGGCCCGGAAAACACCCTGATCCTGGTGGACGGCAAGCCGGTAGGCAGCCGCAACTCGGTGCGCTACGGCTGGCGCGGCGAAC GCGATAGCCGCGGCGACACCAACTGGGTGCCGGCCGACCAGGTGGAACGCATCGAAGTGATCCGCGGCCCGGCGGCGGCCCGCTACGGCAACGGCGCCGC CGGCGGGGTGATCAATATCGTCACCAAGCAGGCCGGCACTCAGACCCACGGCAACGCGACCATCTACAGCTCGTTCCCGACCCACAAGGACGAAGGCGCC ACCCAACGCATGAGCTTCGGCCTCAACGGCCCGCTGACCGACACCTTGAGCTACCGGGTCTACGGCAACGTGGCCAAGACCGATTCCGACGACGCCGACA TCAACGCCGGCCATGAATCCCTGCGCACCGGTAACCAGGTCGGCACCCTGCCCGCCGGCCGTGAAGGCGTGCGCAACAAGGACCTCAACGGCCTGTTGAG CTGGCACCTGACCCCGGACCAGACCCTGGACTTCGAAGCCGGCTTCAGCCGCCAGGGCAACATCTACACCGGCGATACCCAGAACACCAACAGCAACAAG AATGTGCAGGGCCTGCTGGGCCACGAGACCAACCGCAGCTACCGCGAGACCTATTCGCTGACCCACCGCGGCGAGTGGGACTTCGGCAGTTCCATGGCCT ACCTGCAATACGAAAAGACCCGCAACACCCGGATCAACGAAGGCCTGGCCGGCGGCACCGAAGGCATCTTCAGCAACAGCGAGTTCTACACCGCAGTGCT GCGCGACCTGACCGCCCATGGCGAGCTCAACCTGCCGCTGCATGCCGGTTTCGAGCAGACCCTGACCCTGGGCAGCGAATGGTCCCAGCAAAAACTCGAC GACCCCAGCGCCAACACCCAGAGCACCAGCGAAGGCGGCGCGGTCAACGGCCTGACCTCCAGCAACCGCGACACCCAGTCCAGCGCGCAGATCTTCTCGC TGTTCGCCGAAGACAACATCGAACTGCAACCGGGCACCATGCTCACCCCGGGCCTGCGCCTGGACCACCACAGCATCGTCGGTGACAACTGGAGCCCATC CCTCAACCTGTCCCACGCCCTCAGCGACAGCCTGACCCTCAAGGCCGGCATCGCCCGCGCCTACAAGGCGCCGAACCTGTACCAGCTCAACTCCGACTAC CTGCTCTACAGCCGCGGCCAGGGCTGCTACGGCCAGAGCACCAGCTGCTACCTGCAGGGCAACGACAAGCTCAAGGCGGAAACCAGCGTCAACAAGGAAC TGGGCCTGGAATACAAGGCCGACGGCTGGGTCGCCGGCCTGACCTACTTCCGCAACGACTACAAGAACAAGGTGGAATCCGGCCTGGCGCCGGTGAGCCG TGCCAGCGGCGGCAGCGGTGCTTACCGCAACTCGGCGATCTACCAGTGGGAGAACGTACCCAAGGCCCTGGTGGAAGGCCTGGAAGGCACCCTGACCATT CCTCTGGCCAGCCAACTGACCTGGAACAACAACTTCACCTATATGCTGCAATCGAAGAACAAGGAAACCGGCGACTACCTCTCGGTGACCCCGCGCTACA CCCTCAACTCGATGCTCGACTGGCAGGCGACCCAGGACCTGTCGCTGCAGGCCACCGTGGCCTGGTACGGCAAACAGACGCCGAAGAAGTACGACTACCA CGGCGACCGCGTCACCGGCAGCGCCACCCAGCAACTGGCGCCCTACGCCATTGCCGGGGTCAGCGGCACCTACGCCCTGACCCGCAACCTGAGCCTGACC GCCGGGGTCGACAACCTGTTCGACAAGCGCCTGTTCCGTGAAGGCAATGCCCAGGGCGTGAACAATATCGCCGGCGCCGGCGCCGCCACCTACAACGAAC CCGGGCGCACCCTGTACACCAGCCTGACTGCATCGTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCATCACCAAGAACCCGCCGAGAACGCCTGATGAGAACTTTTTTCCTGCCCCTGGCCCTGGCCTGGGGCCTGGCGGGAGCGGCCCTGGCCGCCCCCGCC CCGGACCAGCCCATGGACCGCAGCCTGCTGCAACCCCAGGACCTGCCCTACCGCTTCACTAGCCTGCAACTGGACTCCGCCGACGGCCAGCGGCACTACC AACTGTGGATCGGCAAGCCGCTGCAGGCGCCGCCGCCCCAGGGCTACCCGGTGCTGTGGATGCTCGATGGCAACGCCGCCATCGGCGCCCTCGACCCCGA GCAGCTCAAGCGCCTGGACCCGGGCCAGGCGCCGCTGCTGGTGGCCGTGGGTTACCAGACCCCGCTGCGCATCGAACGCAACGCCCGGACCTATGACTAC ACCCCGCAGCAACCGGGCATCGCGGAGCAGAAAGACCCGTTGACCGGGCAACCCAGCGGCGGCGGCGAAACCTTCCTGCAACTGCTGCGCGAACGCATGC
Amino Acid Sequence
>outer membrane receptor protein
MSMRSMRPFAPFLLSGCCLLSQAVQAANDGTAQPALELEPQSVIATAKEETKQAPGVSVITAEDIQKRPPANDLSQIIRTMPGVNLTGNSTSGQRGNNRQ IDIRGMGPENTLILVDGKPVGSRNSVRYGWRGERDSRGDTNWVPADQVERIEVIRGPAAARYGNGAAGGVINIVTKQAGTQTHGNATIYSSFPTHKDEGA TQRMSFGLNGPLTDTLSYRVYGNVAKTDSDDADINAGHESLRTGNQVGTLPAGREGVRNKDLNGLLSWHLTPDQTLDFEAGFSRQGNIYTGDTQNTNSNK NVQGLLGHETNRSYRETYSLTHRGEWDFGSSMAYLQYEKTRNTRINEGLAGGTEGIFSNSEFYTAVLRDLTAHGELNLPLHAGFEQTLTLGSEWSQQKLD DPSANTQSTSEGGAVNGLTSSNRDTQSSAQIFSLFAEDNIELQPGTMLTPGLRLDHHSIVGDNWSPSLNLSHALSDSLTLKAGIARAYKAPNLYQLNSDY LLYSRGQGCYGQSTSCYLQGNDKLKAETSVNKELGLEYKADGWVAGLTYFRNDYKNKVESGLAPVSRASGGSGAYRNSAIYQWENVPKALVEGLEGTLTI PLASQLTWNNNFTYMLQSKNKETGDYLSVTPRYTLNSMLDWQATQDLSLQATVAWYGKQTPKKYDYHGDRVTGSATQQLAPYAIAGVSGTYALTRNLSLT AGVDNLFDKRLFREGNAQGVNNIAGAGAATYNEPGRTLYTSLTASF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site