Pseudomonas sp. PH1b, U873_RS0108870

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00228
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02163
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00834
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.40.10.120 - - - 30 265 1.4E-84
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 382 476 1.2E-18
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 393 469 3.6E-97
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 242 381 3.2E-10
SMART SM00228 pdz_new IPR001478 PDZ domain 272 354 6.1E-15
Pfam PF13180 PDZ domain IPR001478 PDZ domain 388 468 3.5E-10
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 30 263 1.55E-69
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 387 474 1.31E-15
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 312 324 4.3E-51
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 204 221 4.3E-51
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 31 265 7.3E-98
CDD cd00987 PDZ_serine_protease - - 387 472 5.67593E-18
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 130 150 4.3E-51
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 226 243 4.3E-51
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 170 194 4.3E-51
SMART SM00228 pdz_new IPR001478 PDZ domain 386 465 5.0E-11
CDD cd00987 PDZ_serine_protease - - 272 361 2.24486E-25
Pfam PF13180 PDZ domain IPR001478 PDZ domain 274 363 4.7E-16
Pfam PF13365 Trypsin-like peptidase domain - - 100 233 3.7E-34
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 230 355 1.45E-25
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 267 375 7.1E-27
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 414 468 1.1E-6
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 109 121 4.3E-51
FunFam G3DSA:2.30.42.10:FF:000037 Periplasmic serine endoprotease DegP-like - - 270 371 2.6E-33
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 31 472 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.