Pseudomonas sp. PH1b, U873_RS0108185
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCAGTCCGTGTCTGAATTGCGGTGCCTGCTGTTCATACTTTCGTGTGTCTTTTTTCTGGGGCGAATGCGCCTCTTCCGGCGGGACCGTCCCTGACGAAC TGGTGCAGAGCATCAGTCCGAGCCGGGTGGCCATGCTCGGCACCGACTGTAAATCCCCACGCTGCATCGCCCTCGAGGGCGAAGTCGGCCAGGGCGTGAG CTGCTCGATCTATGAACAACGCTCCAGCCCATGCCGGGAGTTCGAGGCCTCCTGGGTCGACGGCCAGCACAACAGCGACTGCGATGCCGCCCGCGCCGCC TTCGGCCTGGCCCCTCTGGAGCCCGCAGACTGCGAACCCTGGTACGAGGAGAGCGCTTAGCACCATTGGCGATAGGGCCCATAAGCAAATCATTAGAGCC TGTTTGCCACCGCCCATTGCAGCCACCGGGTGCCTTCTATACTCCAAGCACTCGTTGGCGCGCGACCGCCGACATCCGATGACTCAGAGATGGGCATGCT
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| DNA Sequence for Gene |
>U873_RS0108185
ATGGATTGGCTGGGTCTGCATTTCATTACCGAGCTCCCAGACAGCGGGCAGCTGGTTGTCCACTACACCCACAACCCGGTTCTGGTGCTGCTGGCCTACC TGGTGGCCTGCGCCGCCAGCTTCGCCACCCTGGATATGGCCGAGCGTGTCAGCCACGTCGAGCAGCCGGCCAGCCAGCGCCTGTGGCGCTGGGTCGGCGC CTGTTGCCTGGCCGGCGGCATCTGGAGCATGCATTTCATCGCCATGCTGGCCTTCGAAGCTCCCCTGGCAATCCACCACCAGCTGCCACTGACCCTGCTG TCCCTGCTGATCGCCCTGATCGCCGCCTGGCTGGCGATGAATACCCTGAGCCATGCCCGACTGCCGCTCTGGCGCTATGGCGTGGCCTCGGTGTGGATCG GCCTGGGCATCAGTTGCATGCACTACGTGGGCATGGCAGCCATGCACTCCCATGCCGAGGTGTACTACCAGCCGCTGCTCATGGGCCTGTCACTGCTGGT GGCGATCGCCTGTAGCCTGGCTGCGCTGCTACTGTCCCGGCACTTTCGCGATGGCAGCGGGATGTTCCACCAATTGCTCAAGTACGCCAGCAGCCTGGTG CTGGGGGCGGCCATCGTGCTGATGCACTTTACCGGCATCTGGGCCATGACCCTGGTGCTGCCCGCCGGCACCCTGCCCGTTCCCACGGCGCAGAGCGATC ACCTGCAACTGGGCCTGACCCTCAGCGTGATTGCCCTGTTGATCATCGGCAGTGGCATCAGCGCAGCCCTGGCGGACAAGAAGCTGCAGCACAAGGAGCG CGACCTGCGCCGAGTCAATGCCCTGCTTTCGCAACTGGACCAGGCCCGGGTCTCGCTGCAGCAGGTGGCCCATTACGACGCCCTGACCAACCTGATCAAC CGTCGTGGCTTCAATCAGTTGTTCGCGGAAAAACTGCTGGAGAAAACCACCTTCGGCGGCAGCCTGGCGGTGATGTTCCTCGACATCGACCATTTCAAGC GGATCAACGACAGCCTCGGCCACGATGCCGGCGACGAACTGCTCAAGGTCATTGCCGGGCATATCAAGAACTCCACCCGCAGCCACGAAGACGTGGTGGC ACGGCTGGGCGGCGATGAGTTCTGCATCCTCATCAACCTCCACGACCGCGATGAAGCCCGGCACTTGGCCGAGCGCATCATGCAAAAGATGAAGGAGCCG ATCGAGTTGGGGGGGCGGCGCATGGTGATGACCACCAGCATCGGCATCAGCGTCTTCCCCGATGATGGCAAGACCTGTGAAGAGCTGTTGAAGAACGCCG ACCTGGCGCTCTACCAATCCAAGGATGCCGGGCGCAACAACCTGCATTTCTTCAGTTCCAGCCTCAAGACCCGGGCCACCCTGGAGCTGCAGCTGGAAGA AGAACTGCGCAATGCCCTGCGCGATGACCAGGGGTTGCTGCTGCACTACCAGCCGATCTACGACCTCAAGCGCGCCAGAGTCACCAAGCTTGAAGCCCTG GTCCGCTGGCAGCATCCGCAACACGGGCTGCTGACCCCGGATCGCTTCATCAGCATTGCCGAAGCCAATGGGCTGATCGCCGAACTGGACAACTGGGTGC TGCGCAAGGCCTGCGCCGACCTGGCCTACCTGTCGCGCAATGGCAATGGCGAGTTGAAGATCGCGGTCAATTGCTCGGCCTTGAACCTGACCCGCGAAGC ACTGGCCGAAGAGATCGAAAGCGCCCTGACCACGGCTAAGGTCGCCCCGCAACAACTGGAGCTGGAGGTCACGGAAAATGCCCTGATGGGCAATATCGCC AGCACCCTGGCGCTGCTCAAGCAGATCCGCGGCCTGGGCGTGTCATTGTCGATCGACGACTTCGGCACCGGCTATTCATCCCTGGCCTACCTCAAGCGCC TGCCGCTGAACACCCTGAAGATCGATCGCTCGTTCATCCAGGACATCCCCAAGTCAACCCAGGACATGGAGATCGTCCAGGCGATCATCGTCATGGCCCA CACCCTGCACCTGCAGGTGGTGACCGAAGGAGTCGAGACCCTGGAACAGCAGCAGTTTCTCGAGCACTATGGCTGCGACTACCTGCAGGGCTACCTGCTC AGCCGCCCGGTACCGCTGCAGGAAGTGTGCGGGGTGCTGGACGAACTCGACCGGCGCCACACCTCGGCGGCGCTCAATCCTCGGACGCCGGCTCCCGATA GAGGCGAACCAGGGTCGCTGGATCTTGCTCCAGATAGCCTTGCCCACCATGCAGACGCATCAACTGTGCAGCTAACCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGCGTTGCCGAACCCTGCTCCCGAGAAAACTTCACCGCGCCATCCAGGTCCTTGAGCAAAGTCCGCACGTGCCACTTCACCGGTTCGAACTGGCTTTG AGCCATTTGCGGAGCCAGGATCTGCAGCGGCTTGGAGTCGGCAAAGCCGCCGGCCAGAGCCTCGGCGATCAGCCTGGCATCCACCCCCGAGCGCTCGGCC AGGGCCACCACTTCCGCGATCACCAGGGCATTGCAGGCGACGATCATCTGGTTGCAGGCCTTGGTCACCTGCCCGGCGCCCACCGCCCCCATGTGCGTGA CCCGCTGCCCCAGGGCCAGCAGCACCGGGCGAACCCGCTCGATGTCCGCGGCTTCTCCACCGGCCATGATCGCCAGGCTGCCGGCCTCGGCGCCCGGAGT CCCTCCGGAAACCGGAGCGTCGACCCAGGCCATGCCGGTTTCGCGGGCCAGGTCGGCGGCCATCTCCCGGGTGGCCGTGGGTTCCAGGCTGGACAGGTCC
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MDWLGLHFITELPDSGQLVVHYTHNPVLVLLAYLVACAASFATLDMAERVSHVEQPASQRLWRWVGACCLAGGIWSMHFIAMLAFEAPLAIHHQLPLTLL SLLIALIAAWLAMNTLSHARLPLWRYGVASVWIGLGISCMHYVGMAAMHSHAEVYYQPLLMGLSLLVAIACSLAALLLSRHFRDGSGMFHQLLKYASSLV LGAAIVLMHFTGIWAMTLVLPAGTLPVPTAQSDHLQLGLTLSVIALLIIGSGISAALADKKLQHKERDLRRVNALLSQLDQARVSLQQVAHYDALTNLIN RRGFNQLFAEKLLEKTTFGGSLAVMFLDIDHFKRINDSLGHDAGDELLKVIAGHIKNSTRSHEDVVARLGGDEFCILINLHDRDEARHLAERIMQKMKEP IELGGRRMVMTTSIGISVFPDDGKTCEELLKNADLALYQSKDAGRNNLHFFSSSLKTRATLELQLEEELRNALRDDQGLLLHYQPIYDLKRARVTKLEAL VRWQHPQHGLLTPDRFISIAEANGLIAELDNWVLRKACADLAYLSRNGNGELKIAVNCSALNLTREALAEEIESALTTAKVAPQQLELEVTENALMGNIA STLALLKQIRGLGVSLSIDDFGTGYSSLAYLKRLPLNTLKIDRSFIQDIPKSTQDMEIVQAIIVMAHTLHLQVVTEGVETLEQQQFLEHYGCDYLQGYLL SRPVPLQEVCGVLDELDRRHTSAALNPRTPAPDRGEPGSLDLAPDSLAHHADASTVQLTR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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