Pseudomonas sp. PH1b, U873_RS0107270
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCCTCGATGAAAATCTGCGAGAGCTTGGGGTCCTGGCTGCCCAGCGCCATGATCAAGCGGTGCAAGTTGACCGACTCGTCACTGTTGATCAGCAGGTG AAAGCCTCGGGCGATATTCAAAAGCACGCTTTCCACCGGGGTGTCTGCCGACAACTCGTAGATCAGGGTGGGCAATTGTTCTTCGCACTTGGCCACCACG GCGGCACTGAACAGCGTCTCCTTGTCCGTGAAGTGACTGTACACCGTGAGCTTTGAAACACCGGCTTCGGCGGCGACCGCATCCATGCTGGTACTGGCGT AGCCATTGCTCAGAAACAGATTTTTCGCTGCTTCGAGAATGGCCTGGCGCTTGGCCAGATCCTTGGGCCTGCCTGGCCCAATGCTTGCGGAATTATTGTC GGACATTTTTCGACTTTTATTACTGGACTGGTGAGTTTGCTATTAATAACATACCCGCCAGTATAATTATTCCAAGCACCATTAGCGAAAGGTCGCCGCC
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| DNA Sequence for Gene |
>U873_RS0107270
ATGTTCCGCTATGCCTTGCCAGTCAGCCTGGCTTTTTTTCTGTCTGCTTGTGGGCATGAAGAGCCCGTCCAAATCGGCATCCGGCCGGCCATGGTGGTCC AGCCAGAGCCTTCGGCGCGGGCTTCGGAGAGCTACCCCGGCGAGGTGCGGGCCCGCTATGAGCCAGACCTGGCATTCCGTATCGGCGGCAAGGTCAGTCG ACGGCTGGTAGAGGAGGGCCAACGGGTCAAGGCCAACCAGCCCCTGGCCGAACTCGATCCGCAGGATGTGCGCCTGCAACTCGAGGCTGCCCGGGCCCAG GTCACCGCAGCCACCGCCAATCTCAACCTGGTGCGTGCCGAACGAGATCGCTACAAGACCCTGCTGGATCGGCAGATGGTCAGCCGTTCCCAATACGACA ATGCCGAAAACCTCTATCGCGCCGGCGAAGCGCGCCTGAAACAGATCAAGGCCGAGTTCGACGTGGCCAACAACCAGGCCGGCTATGCCGTGCTGCGTGC GCCACAGGATGGCGTAGTGGCCAAGCGTGCGGTGGAAGTCGGGCAAGTAGTGGCGGCTGGGCAGACAGTCTTCACCCTGGCCACCGACGGTGAGCGCGAG GTGCTGATCAGCGTCCCCGAACAGAATTTTGGCCGCTTCAAGATCGGCGAGCCGGTGTCGGTGGAACTCTGGAGCCAGCCGGGCCAGCGTTTCGATGGCC GTATCCGCGAGCTGTCGCCGGCTGCCGACTCGAAGTCCAGAACCTTTGCCGCGCGCATCGCTTTCAGTGCCGGCAAGGTTCCGGCCGAACTGGGGCAGAG CGCCCGGGTGTTCATCCAGAACGCTGATGCGGTCTCGCTATCGGTGCCGCTCTCGGCGCTGTCCGCCGAGGGAGGTGCGACCTACGTCTGGCGGGTGGAT GCCAACAGCACCCTGCACAAGACCCCGGTGCGGGTCGGTGCCTTCGGCGAGAAGAGCGTGCCGGTGCTGGAAGGCCTGGGTGCCAACGACTGGGTGGTGG CTGCCGGGGTGCATGTCTTGCACGAGGGCCTGCAGGTGCGCCCGGTGGATCGCTCCAACCGCGTGGTCAACCTGACGGCCAAGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCCAATGGGTTTCAACCTTTCCGCCTGGGCGTTGCGCAATCGCCAGATCGTCCTGTTCCTGATGTTGCTGTTGGCTATTGTCGGAGCACTTTCCTACA CCAAGCTGGGACAAAGTGAAGACCCGCCGTTCACCTTCAAGGCCATGGTGATCCGCACCAACTGGCCGGGGGCCACGGCCCAGGAAGTGTCGCGCCAGGT TACCGAGCGGATTGAGAAGAAGCTCATGGAAACCGGTGAGTACGACCGCATCGTATCCTTCTCCCGGCCGGGTGAGTCCCAGGTGACCTTCATCGCCCGG GATTCCATGCACTCCAACGAGGTGCCCGAACTCTGGTACCAGGTGCGCAAGAAGATCAGCGACATCCGCCAGACCTTGCCGCCGGGAATCCAGGGGCCTT TCTTCAACGATGAATTCGGCACCACCTTCGGCAATATCTATGCGTTGACGGGGCAGGGCTTCGACTACGCGGTGCTCAAGGACTACGCCGACCGCATCCA
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| Amino Acid Sequence |
>RND transporter
MFRYALPVSLAFFLSACGHEEPVQIGIRPAMVVQPEPSARASESYPGEVRARYEPDLAFRIGGKVSRRLVEEGQRVKANQPLAELDPQDVRLQLEAARAQ VTAATANLNLVRAERDRYKTLLDRQMVSRSQYDNAENLYRAGEARLKQIKAEFDVANNQAGYAVLRAPQDGVVAKRAVEVGQVVAAGQTVFTLATDGERE VLISVPEQNFGRFKIGEPVSVELWSQPGQRFDGRIRELSPAADSKSRTFAARIAFSAGKVPAELGQSARVFIQNADAVSLSVPLSALSAEGGATYVWRVD ANSTLHKTPVRVGAFGEKSVPVLEGLGANDWVVAAGVHVLHEGLQVRPVDRSNRVVNLTAKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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