Pseudomonas sp. PH1b, U873_RS0106170

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PH1b Contig3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCTCTCTTCCTCGCAACGCTGACTAGGGCCAGCACTGAGAAGAAGGAATACCGCCGTGGGGACTCTGAATAAAAGCTTCACCCACCTGTTGCTGATCGGT TGTGCTGTCAGCGCGGTGTACAGCCTTCCGGTTCTGGCGGCAGGCAATGGCGAAATCGTCCTTGAACGCCAAGTGCACCCAACCCCCGCCGGGCGCCCGC TGAACCTCGATCCCAATCCCACTACGGTCAATGCCAATCCTTCGGGACTGGTCACTGGCACGCTCAACAGCGAAATGAGCGACAACGAGTTCGCCGGGAT CAACAGTGGGTCTCTGGTTCGCGGCGCCGTGATGCCCAACAACACCGGTGTCCCCGGTCTCAACGTGGTGACCAATCCCAATGGCCTGCCCGGCATGGCC GCCGGCCACGGGGGTGGCTCGGGCGCGTCGATCTCCAATTCGATCAATCGCTCCATCAGCTCCGGCATGGCGCCCTTGAACAACATCGGAGGCCGCTGAG
DNA Sequence for Gene
>U873_RS0106170
ATGAAACGCACGCTGCTCCTGCTCGCCCTCCTCGGCTGCGCCTCGGCCATGGCCGATAACGGCGGCCAGTCCCAGGACACCGCGACCTTGATCAATTCCG GCTCGGCCTACACCGGCAACCTCAACATCAACCAGGCCGCGGGCGACCAACAACAGCAAACCAACGTGCGGGCCATCGCCATTGGCACCAACGCCAAGGC CAGCACCAGCGTGCCCCAGAAACTCACAACACCAGCCGATCGCTCGCTCAATGCCAGCAGCACCATCGGCGGCAACTCTTTCAGCAACGGCAACGGCGCA CTGGGCGTGAACCAGTCGTCCGGGGCCAACAACCAGATGGCCAATGCCTTGCGGATCAGCATCAGTGCCAATCCGCAAAGCGTTGACGACAGCGCCCTGT CACAACAGAACGTGGCGCTGTTACCAGACTCAGGAGCAACTGGCACCCAGCAAGGCAGCCGCCAGGTCGTTACCAGCGACCAGGCCTTCACCGGCAGCCG TGGAGTGATTCAGGTGAACCAGAGTGCCGGGGTGGGGAACCGAATGGCTAACACCCTGAGTATCCGGGTCGCAGATTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCCTCGTAGTGCAATTAGAAAGTACCAACACTTAACCAACTAATAAGCACCGGAGAAACACCATGAAACCCACAATGGCTCTCAAACCACTGGTTTTCG CCCTGGCCGCAGTCATGGCAATGGCCGCTCAGGCAGGTGGTAACGATCATGGCAACAACGGCGGTCATGGCAACGATCACGGCAATCAGGGTCCTGATCT CAACACCCTGCTGCAGATCACCGCAGGCGCAGGCGCTGCCGTTCTGGACGTACAGAACAGCAACACCAACGTGGTGAAAAACCAGGGCACCAACAACAAC GCCAAGATTGACAACTCGCTGAACAGCTCCAACGGCAACATGGGCGCCAACGCCGCCGCCGGCGACGGCAACCAACAAGACAATGCCGCCGCCCTGGCCA CCGCCGATGAATCCTTCATCTTCGGCAGTGCAGTGGCCGTCTCCAGCGCCACCCAGGTCAACAACAACAACTACGTGAAAAACTCCTCCACCCAAAACAA
Amino Acid Sequence
>autotransporter adhesin
MKRTLLLLALLGCASAMADNGGQSQDTATLINSGSAYTGNLNINQAAGDQQQQTNVRAIAIGTNAKASTSVPQKLTTPADRSLNASSTIGGNSFSNGNGA LGVNQSSGANNQMANALRISISANPQSVDDSALSQQNVALLPDSGATGTQQGSRQVVTSDQAFTGSRGVIQVNQSAGVGNRMANTLSIRVAD
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site