Pseudomonas sp. PH1b, U873_RS0105910

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PH1b Contig3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGCCAGTCGCCGATGTGCTGGTTCGCCGGTTACGCCGGGGTGCCGACCAAGGCCTTCGTCGGCGACTACTACCTCAGTGGCGACACCGTCGAGCTGAACC AGGACGGCAGCATCAGCTTCGTCGGCCGCAGCGACGATGTGATCACCACCTCCGGCTACCGGGTCGGCCCGTTCGACGTGGAAAGCGCACTGATCGAACA CCCGGCCGTGGTCGAAGCCGCAGTGGTGGGCAAGCCCGATCCGGAGCGCACCGAGCTGGTCAAGGCGTTCGTGGTGCTCAGCGAGCAATACCGCGCCACC GCAGAGCTGGCCGAGGAGCTGCGCCAGCATGTGCGCAAGCGCCTGGCGGCCCATTCCTACCCCCGTGAAATCGAATTTGTCAGCGACTTGCCCAAGACCC CAAGCGGCAAGTTGCAGCGCTTTATCTTGCGCAACCAGGAAATCGCCAAGGCTCAAGAGGCCGCGGCGTCAACAGCTACCGCATGAACAGGATTTGAATG
DNA Sequence for Gene
>U873_RS0105910
ATGCAGATCGAAAACAAGGTGTTTCTCGTCAGTGGCGGCGCGTCCGGCCTGGGTGCTGCCAGCGCTGAAATGCTGGTCGCCGCCGGCGCCAAAGTGATGC TGGTGGACCTCAATGCCGAGGCCGTGGCCGCCAAGGCCCAGCAGTTGGGGTGCCAGAGCGTGGTCGCCGACATCAGCCAGGAGGCCGCGGCCGAAGCGGC GGTGCAGGCCACGGTCAAGGCCTTTGGCGGGCTCAACGGCCTGGTCAACTGCGCCGGGATCGTGCGTGGCGAAAAGGTCCTGGGCAAGAACGGCCCCCAT GCCCTGGCCAGTTTCAGCCAGGTGATCAACGTCAACCTGATCGGCAGCTTCAACCTGCTGCGCCTGGCCGCGGCGGCCATTGCCGAGAGCCCGGCGGATG CCGACGGCGAGCGCGGGGTGATCATCAACACTGCGTCCATCGCCGCCTTCGACGGGCAGATCGGCCAGGCCGCCTACGCCGCGTCCAAGGGTGCCATCGC CAGCCTGACCCTGCCGGTGGCCCGCGAGCTGGCGCGTTTTGGCATCCGGGTGATGACCATCGCCCCGGGGATTTTCGAAACCCCGATGATGGCCGGCATG AGCGACGAAGTGCGGGCCGGCCTGGCTGCCGGCGTGCCATTCCCGCCACGCCTGGGCAAACCCGCCGAGTACGCCGCGCTGGCGCGGCATATCATTGAAA ACAGCATGCTCAACGGCGAGGTGATCCGTCTCGACGGCGCCTTGCGCATGGCCGCCAAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGAGGATTCATCATGTCCATTGCCCAAGATCCGATTGTCATTGTCAGCGCCGTCCGTACCCCCATGGGCGGATTCCAGGGTGACCTGAAAGGCCTGAGCG CCCCGCAGCTGGGGGCCGAAGCCATCCGCGCCGCCGTGCAGCGCGCGGGTATTGCCGCCGATGGGGTACAGGAAGTGCTGTTCGGCTGCGTGCTGTCCGC CGGCCTCGGCCAGGCCCCGGCCCGTCAGGCGGCCCTGGGCGCGGGCCTGGACAAGGGCACCCGCTGCACCACCCTGAACAAGATGTGCGGCTCCGGCATG GAGGCCACCATCCTGGCCCACGACATGCTGCTGGCCGGCAGCGCCGAGGTGGTGATCGCCGGCGGCATGGAAAGCATGTCCAACGCCCCGTACCTGCTGG ACCGCGCCCGCAGCGGCTACCGCATGGGCCATGGCAAGGTCCTCGATCACATGTTCCTCGACGGCCTGGAAGACGCCTACGACAAGGGCCGCCTGATGGG
Amino Acid Sequence
>3-hydroxy-2-methylbutyryl-CoA dehydrogenase
MQIENKVFLVSGGASGLGAASAEMLVAAGAKVMLVDLNAEAVAAKAQQLGCQSVVADISQEAAAEAAVQATVKAFGGLNGLVNCAGIVRGEKVLGKNGPH ALASFSQVINVNLIGSFNLLRLAAAAIAESPADADGERGVIINTASIAAFDGQIGQAAYAASKGAIASLTLPVARELARFGIRVMTIAPGIFETPMMAGM SDEVRAGLAAGVPFPPRLGKPAEYAALARHIIENSMLNGEVIRLDGALRMAAK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site