Pseudomonas sp. PH1b, U873_RS0104700
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCTTTGTATTGGACATGGGAGAGCCGGTGAAAATTGTCGAGCTTGCAGAAAAGATGATTCACCTCTCTGGCTTGAGTGTACGTTCAGAAAAAAATATTCA TGGTGATATCGCCATTGAGTTCACCGGTCTTCGTCCTGGCGAAAAGCTTTACGAAGAGTTACTTATCGGTGATAACGTATTAGGTACCGAGCACCCGATG ATCATGAGTGCCAATGAGGAGCATTTATCTTGGGAGAGCTTGAAGCTCAAACTCGAGGAGTTACTTGACGCTGTTGATAAGGATAACTATGTGAGGGTAC GTCAACTACTCCGAGAAACGGTAAGCGGCTATACCCCGGAGGGTGAAATAGTCGATTGGATCTACCGGCAGCGCCGACGCGACTCTTGATTCTACACAAC CAGTAACCCTCTCATCTTTGACTTGCTCCCTGCATCATCTAGGTTTGAGAGGCAGCTTTGGAAAAGCTGCTTTCCTTACTTGATGTCATGGAGCGTCACT
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| DNA Sequence for Gene |
>U873_RS0104700
ATGCGTAACTCTTATTTCTCCTCTCTGATCTTTGCCGTTCTTGCCAGCCTGGCATTTGTCACTCATGCGGCGCCGACTCCCAAAGCGCAGGCCAGTCCTG CGGTAGTGACTGAGCACGCAACGGTGCAAACAGGCAAAGTCGACCTCAATACCGCAGATGTGTCTGTTTTGCAGCGCGAACTCTTTGGTGTGGGGACGGC GAAGGCCAAGGCAATTGTCGCTTACCGTGAAGAAAACGGGCCATTCGCTTCTGTGGATGAGTTGCTTGAGGTCAAGGGTATTGGCAAGAGCATCCTGGAG CGTAATCGGGACAAGCTCGAGGTCAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCGAATCAATAGCGTTCAAAGGCCGGTCCCTGGCCGGCCTTGTTGTGGCTCATTATTCCTGGACCACTCTGTAGGAGTTTCAACCTAAGGAAGCATCAT GGGATTTCGGGTCGTTACCGCTGAAGAAAAGGCTGAAGCCATTCGCTTAGTTGTGGAGATGAATTACTTAGTGCCCAAGGGATGTGAGCAGACTGGCTTT GGGCCCACGGCCCTGTGCCGCTGGGTAGCGAGATGGCGCAAGGAGCATGAAGGAGCCTCGTAGCCCACGCGTCCTCAGGACCAGGAGCTGATTGATTCAC TGTATGCCAGGTTGGCTTTGCTGGAAGCCGAGAACAGTGTCCTAAAAAGCAGTTGCCCTCTCATCTGAAGGTGCTGTTCAGCCGAATCAAGTGATCGAGG GTTTGAAAGGGCCGCTCTCTATCCGGCACGTTTTCCGACTTCTAGGCGTGCCTCGCAGCAGCTATTACGCCAAGCCTGTGGCCCGACCTGAGCATCGGGT
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| Amino Acid Sequence |
>competence protein ComEA
MRNSYFSSLIFAVLASLAFVTHAAPTPKAQASPAVVTEHATVQTGKVDLNTADVSVLQRELFGVGTAKAKAIVAYREENGPFASVDELLEVKGIGKSILE RNRDKLEVN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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