Strain | Pseudomonas sp. PH1b Contig2, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GGGCTTGATTCACCGCGAGCCAGCCATTGACCGCGTCCTCACCTGCGTCGGCGAAGGCCCGTTGCAGCAGCTTGACCTGCTCCCGGCGCAGGGACTGTTC GAAGCGCACGCCATCGGCCGTCAGTTCCAGCAGGCGTTTGCGCTTGTCACTCTCTGGCGCGAGGCTTTCCACCAGGTGCATCTCCAGCAACTGGCGCAAG GGTGTGTTCAGCGCCTGCTTGCTCACCCCCAGCAGGTTCAGCAGCTCCTTGACGCTGAGCCCGGGATAGCGGGCGATGAAAAACACGATGCGCTGATGCA CTCGGCTCAAGCCGCGGCGCTCGAGCATCTCGTCGGCCTTGGCGGTAAACGCCTGGTAGCCGAAGAAGAAGGCTTCCATGGCGGCTTGTTGCGAGTTCTG GTTTTTAAGGTCAAGCATATTGACGTATCTGCTCGGGGCGGCGTAATTTCGGTCAAGTAGTTTGACGTATTTCCCTCAGCCTTCGCTAGCGGTGGTCCCC
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DNA Sequence for Gene |
>U873_RS0104430
ATGGCTTTCTCCGAACTTGTATCGCGCCTTAAAAGCTCCCTGATCCGTGAAATTCTCGCCGCGGCCCAGCGCCCGGAAGTGATGTCGTTCGCCGGGGGGC TGCCTGCCGAAGTGATGCTGCCTCCGGTGCAGTGGCAGGACATGCCCCTGTCCATGGGGCAGTACGGCATGAGCGAAGGAGAGCCGCAACTGCGTGAAGC CCTGGCAGAACAGGCTCGCCAGCTGGGTGTGCCCTGCAGCGCCAGCCAGGTGCTGGTGGTCAGCGGCTCGCAGCAGACCCTGGATCTGGCGGCCAAGCTG TTCATCGACCCCGGTACCGAGGTGCTGCTGGAGGCACCGACCTATCTGGCCGCCCTGCAGATCTTCCAGTTGTTCGGCGCCGCCTGCCTGAGCGTGCCGC TGGAGGCCGACGGTCCGGACCTGACCCGGCTGCGTGCACGCCTGGAGCAGCATCGGCCGGCCTTCATCTACCTGATCCCGACCTTTCAGAATCCCTCGGC AGTGCGCTACAGCGAAGCCAGGCGTGATGCCGTGGCGTCCTTGCTGGACGAGTTCGGCGTGACCCTGATCGAAGATGAGCCGTACCGCGAACTGTCCTTC GATGGCGGCAGCGCCACGCCTATCGTCAGTCGTCTGCAGAAGGCCAGTTGGATCTACACCGGCACCGTGTCGAAAACCCTGCTACCCGGACTGCGGGTTG GCTACCTGATCGCCAGCCAGGACCTGTTCCCGCATCTGCTGCGACTGAAACAGTCCGCGGACCTGCACACCAACCGCGTCGGCCAGTGGCAGGCCATGCA GTGGATCGGCACCACGCAATACCAGCAGCATCTGCATGAGCTGCGCGGCTTCTATCGCCAGCGCCGCGATGCCTTCCAGGCGGCCCTGGAAACCCATTTC AGTGATCTGGCGCAATGGCAGGTGCCCCAGGGCGGGCTGTTTTTCTGGTTGAGCTTGAAACAACCGCTGGACACCCGCACCTTGCTTGATTCAGCGTTGG CACAGGACGTGACGTTCATGCCCGGTGAGCCCTTCTTTAGCGAGCCTGAGCGCAACCTCGGCCATTTGCGGCTGAATTTCAGCCATATCGATCCAGCCCG GTTGGACGAAGGCCTCAAGCGGCTGGCCACCGTGATACGTCAAGCACAGGCTGCACAGGCAGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GGGGAAGGCCATGTATAAGGTTTACGGTGATTACCGTTCGGGCAATTGCTACAAGATCAAACTGATGCTCAATCTTCTGGGGCTGCCCTACCAATGGCAG GCGGTGGATATTCTCGGGGGCGATACCCAGACCGAAGCCTTCCTGGCGAAGAACCCCAACGGCAAGATCCCGGTGCTGGAGCTTGAGGACGGTACATGCC TGTGGGAGTCCAATGCGATTCTCAACTTCCTTGCCGATGGCTGCGAGTTCCTGCCCAGCGAGCCGCGCCTGCGCACCCAGGTCTTGCAATGGCAGTTCTT CGAGCAGTACAGCCATGAGCCCTATATTGCCGTGGCGCGCTTCATCCAGCAGTACGAGGGCTTGCCCGAGGAGCGTCGCGAGGAATACCTGAAGTTGCAC AAGCGCGGCTACAAGGCATTGGAGGTGATGGAAAAGCAACTGAGCCGCACGCCTTACCTGGTGGGCGAGCACTATTCCATTGCTGACATCGCACTGTTTG
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Amino Acid Sequence |
>GntR family transcriptional regulator
MAFSELVSRLKSSLIREILAAAQRPEVMSFAGGLPAEVMLPPVQWQDMPLSMGQYGMSEGEPQLREALAEQARQLGVPCSASQVLVVSGSQQTLDLAAKL FIDPGTEVLLEAPTYLAALQIFQLFGAACLSVPLEADGPDLTRLRARLEQHRPAFIYLIPTFQNPSAVRYSEARRDAVASLLDEFGVTLIEDEPYRELSF DGGSATPIVSRLQKASWIYTGTVSKTLLPGLRVGYLIASQDLFPHLLRLKQSADLHTNRVGQWQAMQWIGTTQYQQHLHELRGFYRQRRDAFQAALETHF SDLAQWQVPQGGLFFWLSLKQPLDTRTLLDSALAQDVTFMPGEPFFSEPERNLGHLRLNFSHIDPARLDEGLKRLATVIRQAQAAQAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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