Pseudomonas sp. PH1b, U873_RS0103065

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PH1b Contig2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGGCGTCGCCCAGGTCCAGGTGCAGCGCGGCGACATCGACCTTCGGGCCACCCACGCCGACCAGCGCCTGCGCCTGTCGGCCGGGGAAAGCGTGCGCGTC GGCCCCCAGGGCTTCGATCGCCCGGCCAAGCTCGATGCCGCCAAGGACCTGGCCTGGGTCCAGGGCCGCCTGGTATTCGAAAACTGCCCAATGAGCCAGG TGCTGGCCGAACTGCGCCGCTATTACCCTGGCTGGATCGTCAACAACAACGAGCACCTGGCGCAGGTCGCGGTGACCGGCAACTACCGCCTGGACCAGCC CCTGGACGTGGTGCGCTCCCTGGCCCACATCACCTCGGCACGCTTGTCGGAGTTCCCCGCGCTGGTGATCCTCAACTGAGAATAATTATTTTTACGCGAT AGCGGCAGGTCGTACGTCTCGTTATAGCCAATGCAACTGATTCGCATTTTGTATGCGCATCTGCACCTATAAAAGTTTCGTGCGACCCGGAGCGCTTTCG
DNA Sequence for Gene
>U873_RS0103065
ATGTCCCCTCGCCTCAACAGCCGATCCTCTGTTTCCGCTGCCCGCCTGCAGAACTGCACCCTGTCGCTGCTCACCGCAGCGATTCTGCTGGCCGGTACCC ACGCCACGTCTGCCATGGCCGCCGACGCCCCGGCACCGTCCAGCCAGCGCATGGGCAACTACAGCTTCGCCATTGGCCAGCAACCGCTGGTCTCGGCGCT CAACGCCTTTACCGCCGTCACCGGCTGGCAAGTGGGCCTGCCTGCCGAGCTGGGTACGGGCGTCGCCTCCCCGGGCGTGCGCGGTTCGCTGCCCCCGGAG AAGGCCCTGGATCGACTGCTGAGCGGCACCGGCCTGAGCTACCGCAAGCTGGGCAACAACAACATCGTGCTGGAAAAACGCAGCGCTGCGAACGTAGTGA ACCTGCAGCAGGTGACCATCAGCGCCACCCGCCAGGAGCAGGACGTCAGCTCGGTACCGAGTACCGTCAGCGTGCACACCCGACAAGAACTGGACCGCCA GAACGTCAACACAATCAAGGAACTGGTGCGTTATGAACCGGGGGTTTCCGTCGGCGGCGCCGGACAGCGCGCAGGCATCAGCGGCTACAACATCCGCGGC ATCGACAGCGACCGGATCCTCACCCAGGTGGACGGCGTCGAAGTGCCCGACCATTTCTTCAGTGGCCCCTACGCCAAGACCAATCGCAACTATGTCGACC CGGAAATCGTCAAGCGCGTGGAAATCCTTCGCGGCCCGGCCTCGGTACTCTACGGCAGCAGCGCCATTGGCGGCGCCGTCAGCTACTACACCCTGGACGC CGACGACATCATCAAGCCGGGCCAGGATTTCGGCGCCCGGCTGAAGACTGGCTACAGCTCGGCTGACGAAAGCTGGCTGAAATCCGGCACCTTCGCCGGG CGTGTCGGCGAATTCGACGGCCAGTTGCACCTGAGCCAGCGTGACGGTCATGAAACCGAATCCTACGGCAGCAACAACGGCACCGGGCTCAATCGCACCG CAGCCAACCCGGAAGACGCCCGCACCACCAACGTGCTGGCCAAGCTCGGCTGGAACTATGCAGACGACGCACGTCTGGGCCTGACCTACGAGAAGTACAA GGATGACCGCGACACCAACCAGAAAAGCGCGGTGGGCGGCCTGTTCCTCAATGGCGTAGGGCAGAACTGGTATCGCTCGCGAGTCGGCAACGACACCATT ACCCGGGAACGTTTCGGCCTGGAAAACCGCTTCGCCCTGAACTCGCCCATTGCAGACCAGATCAAGTGGAGCCTGAATTACCAGATCGCCAAGACCGACC AGACCACCTCCGAACGCTACAACCCGGTATCGGTCTTCTCCCCGGTGGCCCGCGACGTACTGCGTGAACGCCAGACGCTGTACCAAGAAAAGCAATGGGT GTTCGACGCGCAATTGGAAAAGGCTTTCGCCCTGGGGAATACCGATCACCAGTTGACCTACGGCACCACCCTCAAGCAGCAGAAAGTCACCGGCTCGCGG TTCGGCACCGCTACGTGCCTGACAGTCGGTGCCGGCTGCACGGCCGTCGGAGCGCCCAGCCCGACCGCCAGTGACAGCGTGAAGAAGTCCAGCGACTTCC CGGACCCGACCATCAACACCTACAGCCTGTTCGCCCAGGACCAGATCAGCTGGAACGCCTGGACCTTCACTCCCGGGCTGCGCTACGACTACACCCAGCT CAAGCCGAAGCTGACCCAGGAGTTCCTCAACGTCGCCAACCCCACCGGCGCCTTCCCGGTCAGTGACGATAAAAAGACCTGGCACCGTGTCTCGCCCAAG TTCGGCCTGACCTACGCCTTTGACGAGCACTACACCGGCTATGGCCAGTACTCCGAAGGGTTCCGCACGCCGTCGGCCAAGGCGCTGTACGGGCGCTTTG AAAACATCGCCACCGGCTACATCGTGGAGCCCAACGCCAACCTCAAGCCGGAAACCAGCAAGAGCTATGAAACCGGCTTGCGCGGCAATTTCGACGCAGG CAACTTCGATGTGTCGGTGTTCTACAACCAGTACCGCGACTTCATCAACGAAGACGCGATTACCGCCGGTGCCCTGCAGACCGTCATCCAGAGCAACAAC ATCAAGCACGCCACCATCAAGGGCGCCGAAGCCAAGGGTCGCCTCAACCTCGACGCCTTCGGTGCTCCACAAGGCCTGTACAGCATCGGCTCGGTGGCCT ATGCCTACGGTCGCAATAATGACAACGGCGAGCCGATCAACAGCGTCAACCCGCTCAAGGGCGTGTTCGGCCTGGGCTACGACCAGGACAACTATGGCGC GCTGCTGAGCTGGACCCTGGTCAAGCGCAAGGACCGTGTCGACGACAGCACCTTCAAGGCTCCGGACGGCCGCACCACCAGCAGCCAGTTCAAGACTCCG GGCTTCGGCATCCTCGACCTGACCGGGTTCTACAAGGTCACTGATGACCTGACTGTCAATGCCGGCCTGTACAACCTGACCGACAAGAAATACTGGAACT GGGACGACGTGCGCGGCTACGACAGCGTCGGTGAAGCCGGCCAGACCGCCCCCGCCAACCTCGACCGCCTGACCCAGCCGGGCCGCAACTTCTCGGTCAA TCTGGTCTGGGATATCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGCGCCAGCGCCTCACTGCTCTTTTTCATCCAGGGCAGTGAGGATTTTTTACTGTGTCGCGTCTTCTTGTTCGTCTAGTCACTAAGTGCCTCTCATTCTC AAGGACATCTGCATGACCTCCCAGGATTCCGCCCAGCGTCACCACCTGCGCTCCCAACGCCTGAACCAGATCACCCACGAGCCGCACTCCAAGCTCGACG CTCTGGTCAAGGCCCACGCGCCCTTTGAAACCCAGGGTGCGTTCGCCCGCTTCGTGGTCGCCCAGTACCTGTTCCAGTCGGAACTGGTAAGCCTGTACAA CGATGCCGAACTGATCAAGATCGTTCCGGACCTGGCCGAGCGCTGCCGCGCCGAAGCGGCCAAGGCCGACCTCGCCGACCTGGAAACCGAGATCCCGGCA CCGGTAGCCGGCGCCGTCAACAACCCGAGTAAAGCCGAAGCCCTGGGCTGGATCTTCGTCTCTGAGGGCTCCAAGCTCGGCGCCGCATTCCTGATCAAGC
Amino Acid Sequence
>TonB-dependent receptor
MSPRLNSRSSVSAARLQNCTLSLLTAAILLAGTHATSAMAADAPAPSSQRMGNYSFAIGQQPLVSALNAFTAVTGWQVGLPAELGTGVASPGVRGSLPPE KALDRLLSGTGLSYRKLGNNNIVLEKRSAANVVNLQQVTISATRQEQDVSSVPSTVSVHTRQELDRQNVNTIKELVRYEPGVSVGGAGQRAGISGYNIRG IDSDRILTQVDGVEVPDHFFSGPYAKTNRNYVDPEIVKRVEILRGPASVLYGSSAIGGAVSYYTLDADDIIKPGQDFGARLKTGYSSADESWLKSGTFAG RVGEFDGQLHLSQRDGHETESYGSNNGTGLNRTAANPEDARTTNVLAKLGWNYADDARLGLTYEKYKDDRDTNQKSAVGGLFLNGVGQNWYRSRVGNDTI TRERFGLENRFALNSPIADQIKWSLNYQIAKTDQTTSERYNPVSVFSPVARDVLRERQTLYQEKQWVFDAQLEKAFALGNTDHQLTYGTTLKQQKVTGSR FGTATCLTVGAGCTAVGAPSPTASDSVKKSSDFPDPTINTYSLFAQDQISWNAWTFTPGLRYDYTQLKPKLTQEFLNVANPTGAFPVSDDKKTWHRVSPK FGLTYAFDEHYTGYGQYSEGFRTPSAKALYGRFENIATGYIVEPNANLKPETSKSYETGLRGNFDAGNFDVSVFYNQYRDFINEDAITAGALQTVIQSNN IKHATIKGAEAKGRLNLDAFGAPQGLYSIGSVAYAYGRNNDNGEPINSVNPLKGVFGLGYDQDNYGALLSWTLVKRKDRVDDSTFKAPDGRTTSSQFKTP GFGILDLTGFYKVTDDLTVNAGLYNLTDKKYWNWDDVRGYDSVGEAGQTAPANLDRLTQPGRNFSVNLVWDI
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site