Pseudomonas sp. PH1b, U873_RS0102810

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PH1b Contig2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCTGCACCATGGAAACCTTCGAGTCAAGCCAAACAAAAAGACGCTTGGAACAAGGGTTTTATGCGGTTTTTACAGACCGGCACACGCCACTGAAGAAAAA TCAACGAGCACTTGCAGTTTGTGCACGGTTGTTGCATCCACACCCGACATCGTCTGCAACGCCCCACCGAAAGTGGACGTTAAAGACTCATGATAATAGT GGCAGGGTTGCCCGAAAGTGCTTTGTAGAGTGTCTGCATGGGGGGATTAATTCCTGCATTGCGCCCCTTCGAAGAACACTGTTTTAGTTGTCCGTCTGGA CACCATCAGGCTGCACAATTGCGACACTGATCAAGCAGTTTGCGACAGGCTCGTAAAGAAGCCGAAAGGATAGATTGGCAAGTATCGCCAACATTGTCAG CGTGATATAAGTTTGCGCCGACACAAAAAGAAAGAGCCGCCCAGATAAAAAAATAGGTGGGACGGCAGTACTCTTCTAAAAACCAAAGGAGCAAATCACG
DNA Sequence for Gene
>U873_RS0102810
ATGCGCGTGATGAAGTGGAGCATGATCGCCCTGGCTGTATCAGCAGGCACCTCGCAGTTCGCAATCGCGTCCTCCCAGGACGATTCCAAGGGCTTTATCG AAGATAGCACCCTGACCGCCAAAACCCGTCTTGAGTACATGAACCGCGACTTCAAGAACGGTGCTGGCAACCACGCACGTGACGACGGCGGCTACAAAAG CGGCTATCGCCAAGATACCGGGCTGAGTGAACTGCTGCAGTACAACTCCGGCTTCACCCAAGGCACCGTGGGCGTCGGCGTTGACGCGTTCGCCATGGGC GTGATCAAGCTTGACGGCGGCGCAGGTCGCTCCGGCAACGGCCTGGCAGCCAACAACCGCTTCGGCCAGCCAGAAAAAGACTCGTCGGCTGTAGGCGGCG CGGTCAAGTTCCGCATCTCCGATACCGTACTGAAGTACGGCGACCAGATGGTTGCCAGCCCAGTGTTCTCCACCGACGACAGCCGTCTGCTGCCAGAAGT CGCCACCGGTACCATGATCACCAGCAAGGAGATCAAGGGCCTGGAACTGAACGCTGGTCACTTCACCGCCCTGCGCTCGCAGACCGGTCAGTACAACGAC AGCATCAACGGTCGCAACAGTGACGGCCTGAAAAACCCAGGCCTGACCTCTGCCGACTTCGCCGGTGCCACCTACCAGTTCACCGACAACTTCGTCGGTG GCGTGGCGGCGTCCAAGGTCGATGACTACTTCAAGAAGCAGTACATCAACCTGAACTACACCTTCCCGATCGCCGACAACCAGTCGCTGAACCTCGACTT CAACGGCTACCGTACCGAAGACGACGGCAAGAAACTGTACGGCAAGCTGGACAACAAACTGTGGAGCCTTGCGGCTGCCTACAGCATCGGCGCGAGCAAG TTCACCATCGCCCACCAGCGCTCTACTGGCGACACCAACTACCTGTACGGTGTTGACGGTAACGGCACCGTCTTCGTTGCCAACTCCATCCAGATCTCCG ACTTCATCGGCAAGGACGAGCGCTCCTGGCAGGCTCGCTACGACCTGAACATGGCAACCTTGGGCGTTCCTGGCCTGAGCTTCATGGCTCGTTACGTGAA GGGTGACAACATCAGCACCTCGTCCAATACCGAGGGCAAGGAAAACGAGTTCAACTTCGAAACCAAATACGTGATGCAAGAAGGTCCAGCCAAGGACCTG TCGTTCCGCCTGCGTAGCGCTGTGTACCGTGCAAACGGTGCTTACAACGCGGATTACACCGCAGACAACAACGATGTTCGTATCATCGTAGAGTACCCGC TGAGCATCTTGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTTTAGTGCCCAGTTAATGCGCTAACACGCAGCTCTAATAAAAACCGTCACCTGGTATCAGGCTGACGGTTTTTTTATGCCTGCTGAAATGCAACATTGA AAAGACAATTAAATAGCAAGCTAACTAACATAGCTCATGTCGGTAGTTGCTCTCAGCTCTCCCAGGCAGGTGTGTTAGTTGCCATTGAATGGGAATTAAA ACAAACAAGGGGCTGATAGCCCCTTGTCTTGAACAACATAGCTGACCGAACGGCCAGGTCATGAAACCGGTTTATTGCACCGCCGCTTCCTGAACCACGC GAATCACCCGCTGCGGAAAGGGAATATCAATTCCCGCGGCCTTCAAGCGATCACGAGACAGTTCATTGAACTGGAACAAAACATCCCAATAGTCCGCGGT CTTGACCCACACCCGCAGTGACAGGGTTATCGCGCTGTCTCCCAAGGTGGACACCACCGCCACCGGTGCAGGATCGGCCAGCACGCGGGCGTCCTTGGCC
Amino Acid Sequence
>porin
MRVMKWSMIALAVSAGTSQFAIASSQDDSKGFIEDSTLTAKTRLEYMNRDFKNGAGNHARDDGGYKSGYRQDTGLSELLQYNSGFTQGTVGVGVDAFAMG VIKLDGGAGRSGNGLAANNRFGQPEKDSSAVGGAVKFRISDTVLKYGDQMVASPVFSTDDSRLLPEVATGTMITSKEIKGLELNAGHFTALRSQTGQYND SINGRNSDGLKNPGLTSADFAGATYQFTDNFVGGVAASKVDDYFKKQYINLNYTFPIADNQSLNLDFNGYRTEDDGKKLYGKLDNKLWSLAAAYSIGASK FTIAHQRSTGDTNYLYGVDGNGTVFVANSIQISDFIGKDERSWQARYDLNMATLGVPGLSFMARYVKGDNISTSSNTEGKENEFNFETKYVMQEGPAKDL SFRLRSAVYRANGAYNADYTADNNDVRIIVEYPLSIL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site