Pseudomonas sp. PH1b, U873_RS0102635
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGTTGATCAGGATCTGTGCCATGGAGTCACGGGCGGCCGGCGATTCTTCGCGCAGGTAGGCCTCGTGCATCGCCTGGATGAAGTCCACGGGGTGGTAGT AGGAAATGAACTGCAGGGCGTCGGCAACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGAGTCGCGCTCCTCTAAAAGACGGGAACATTTAATA AGGTGGCTGCAGCTTGGGTGCATCGGTCGGTTGCAGTCACCTTCAAGGCACGCCGGACAACAACTGGCGCGACGCTAAAAAGGCGCCGCAGTATACCGCG CCTGGGTGCCGGGCACACCCGCCAGCCAGGCAAACGAAAGTCGCCCATCGAATGGGCACTGTTCTTGCGTGGATCTGCGGCCAAACCTCGGAGCGCGGCT TAAAATTGAGATAGTCATTTGTCGGTCGCAGCACTAAAGTGGCAAGTGGCCTGCAGGGTAGGAAACTCTTTACGCCTCCTTTCTCACGGTGAGTCAACGA
|
|
| DNA Sequence for Gene |
>U873_RS0102635
TTGACCCATAAAGCCATCCAGAGCTTGATACTCAAGCGTTTCACGCTTGCTGCGGGCACCTACGGACTGATTCTGCTGCTGTTCTGGCTGGCCGTTCTCA CGGGACATTTCCGCGCCTCCAGCAGCAGTGCGCTGCTGGCCAGCGGCCTGGTGCTGGCCAGCCAGGGACTGCTGTACTGGGTCTTTGTCAGCGGGCGCAA CCTGGGCTTTGCCGATCCCAGCCTGACCGAGGTCCAGGTGGTCCTGGGCATCGCCTGGCAGAGTTGGCTGATCGCTCATCTGGATCAGGTGCGGGGGGTA TTCCTGATGTTCTATATCCTGCCCTTGCTGTTCGGCCTGTTTCATTTATCTCGTCGGGCTTACCTGCGCTGCGCGACCCTGATCTTTTTCTGTTTTGCCG GGATCAACCTGTGGGATGGCTATCGCTTTGTGCTCGGGGATCCGCAGCTGGCTGCGCTGCAGCTCTGTGCCTTGCTGGTGATGCTGGCCTGGATGAGCCT CTACGCCGCCTATGTCCAGGCGTCGCGCTCACGCATGCGCCAGCGGCGCTTCGCCCTGCAGGCCCATCAGGACACCCTGCGGGGAATGATGCGGCAACTG GAGGACCTGGTGGCGACCGATGAGTTGACCGGCCTGTTCAACCGCCGGCATTTCCTGCGCATCACCAGCCGCGAACTGCAGGCCATGGACCAGGACGCGG TGCATGGGCTGGCGTTGATTGACCTGGACCATTTCAAGCGCATCAACGATCTTCACGGTCATGCCGCGGGGGACCAGGTGCTGCAGGCCTTCGCCGCCGT CGCCACGGCCTGCCTGCGGGACGGTGATGTGCTCGCCCGCTATGGTGGCGAGGAGTTCGTGGTGCTGCTGCCCGCCTGTGATGCCGAGCGCCTGACAGCC TGCTGCGAGCGGTTGCGCCTGGCGTTCATGGAGGTGCAGTTGGTGGGCCTGAAGGTGCATGACCTGAGCCTGTCCGCGGGCATGACCCTGCTGCAGGCCG GGGACGATCTGGACAATGCCCTGCAGCGCGCCGACCAGGCGCTGTACCGAGCCAAGCGTGACGGTCGCAATCGCTGCTTCGCGGCCTGGGAGCAGCTCGA TGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGTGACGGTTGGTACGCAGCGCTGGTCGGTGGAGCCCGGAAGCAACCTGCTCGATGCCTTGAACCAGGCTGGGGTGGCGGTGCCCTACAGCTGCCGTGCC GGCAGTTGCCATGCCTGCCTGGTGCACTGTGTCCAGGGCACGCCCAGTGACAGCCGGCCGGATGCCCTCAGTGACGAGCAACGGCGTCGCGGCTGGCGGC TGGCTTGCCAGTGCCGGGTGGTGGAGGACCTGCAGGTCGAGACGTTCGATCCCCTGCGTGACGGCTTGCCTGCCACCGTGGTCGGGCTCGACTGGTTGTC GACCACGGTCCTGCGCCTGCGTTTGCAGCCCGAGCGGCCGCTGCGCTATCGCGCCGGCCAGCATCTGGTGCTGTGGGCGAATGGCCAGGTCGCTCGGCCT TATTCCCTGGCCAGCCTGCCCGAGGAAGACCGCTTCCTGGAGTTCCACCTGGACTGCAGGCTGCCGGGGCAGTTCTGCGACGCCGCCCGCCGGTTGCAGT
|
|
| Amino Acid Sequence |
>DeoR faimly transcriptional regulator
MTHKAIQSLILKRFTLAAGTYGLILLLFWLAVLTGHFRASSSSALLASGLVLASQGLLYWVFVSGRNLGFADPSLTEVQVVLGIAWQSWLIAHLDQVRGV FLMFYILPLLFGLFHLSRRAYLRCATLIFFCFAGINLWDGYRFVLGDPQLAALQLCALLVMLAWMSLYAAYVQASRSRMRQRRFALQAHQDTLRGMMRQL EDLVATDELTGLFNRRHFLRITSRELQAMDQDAVHGLALIDLDHFKRINDLHGHAAGDQVLQAFAAVATACLRDGDVLARYGGEEFVVLLPACDAERLTA CCERLRLAFMEVQLVGLKVHDLSLSAGMTLLQAGDDLDNALQRADQALYRAKRDGRNRCFAAWEQLDA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|