Pseudomonas sp. PH1b, U873_RS0100315
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PH1b Contig1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGGCGGCGCCGGACATGCGCCCGCGCCCGGCCTTGACCAGGTCGAACTGGCGCGAGGTGTCCTTGTCCGCTTCGCTGCCTTCGGTGCCGAAATCCAGGG GCACGGTAATGTGGCTGTCGAAGGAAATGATGCGCTCTTGCAGGTCGTTGGCGTGCTTGACGATCTCGTTGGGATAGGACACCCGGTCCTTCCAGTAGTA GTGCCAGGCTGCGCCGGCACCGACACCGAGGGCGGCGACGATAAGTATCAGCAGGCTCAGATAGAGGGTTTTCTTACCAGATATTTTGATCATTGCTATC CCAGTCGCAGGCGGGCTGATGACGGGGTCGGGCCCTGGGGTTCAGTGCTGCCGGGTCCGACCTTTTGTGCACATCTATCCGCGATAAACGAGCTGGCCGA GAGCAAATTTAGCGTTCCGGGAATCGCTGGCCGGTAAATTTCCCTGCAAATCCAACGTTCTAGCTAGATGCGTGACGCGCCACTGGATAAAGGTAGAGCG
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| DNA Sequence for Gene |
>U873_RS0100315
ATGAGGTTTTCGAGAAGAGGATTTTTGACCGGTCTGGCGGTGACGGGAGCGGCTATCCCTGTGGCGTTCTACACCCAGAAGGAGTTGCTGCGTCAGGATG TTCGGCGCAAGGAAGAGCAGGAGATCACCCCCGGGGAAGCCAAGCTGGAGGTGGCCCTGGACCCTGGTGTACGCCTTGCCGATCACCTGCGAGGCATCTG GGATATCGAGTTCCTGGACGCCAACGGACCGCAGTCCTTGCCTCGTAAAGGGTGTGAACTGCTGCTGGATGCCGGCCCCACGGGGCGCGGCTTGCGTGGC GTGCTGGGGCGTGCGCAGAGTCTGCGCGGCGACGGCCCGGTGGAGTTCCTGGTGCAGGGCGACCTGGCGTCGGTGGACGCCGCCAAGCTGCGTTGGCGCC TGTTTGCCGGTGGCCGGATCGCCGGCGCCCCCAGTCATGAATGCCAGGTGGTGCTTGATGAGGTCTGGGCCAGTTGGGGCAATGCCGGCAGCGGCACCCT CAGTGGCAGCCTGTATTCATTGCAGGCGTCGCCGCTGGCGCCGGTATCCGCGGCACGTTTCGTGGCGCGCAAGCGGACCTTTCCAGCCGCCCGGGACCAG AGCGGGCTGAGCCCTGCCTTGCTGGCGTGGCTGGTATCGCCCCAGCACCGCCTGTTCCACCAGCTCTGGCATGCCTCGCGGGACCGTTGGCATTCCCTGC CCAAGGACAAGCGCAACAGCCTGCGGGGGCTCGGCTGGCAGCCGGGCCCGGTCAAGCACGAGCGTGATGCCCGTGGGCGACGCAAGCATCGCAATGCCTC GGGCATCGACTTTCTGTTCATGCACCGGCACATGCTGCTGCATGCCCGCTCACTGCAGCCGGACCTGGTGTCCTGGCACCAACTGCCGTTGCCCTGCGCC CGTCTTGAGCAAGACCGGCAGGCCTTTATCCGCTATTACGAAAACCATGACGGCTGTTCGGTGCCGCCGGCCTGGGTGGCCGACGACGATGAAGAGTTCA CCCAATGGCTGCACGGGCTGAAAAGCGATGCGGCGTTCTATGGCAACTTCCAGGTCTGGGAATCGCAGTACCAGGACCCCGAGTACCTCAGCCGCCTGAC CCTGGGCCAGTTCGGGTCGGAGGTCGAGCTGGGCCTGCACGACTGGCTGCACATGCGCTGGGCCGATGTCGCCCGCGATCCCTCCAACGGCATGCCGGTG ATGGAGGCGCGCCTGTCCTCGGACTTCGCCGGGCGCTGGTACCAGCCGCAGAATGACTTTCTCGGCGATCCCTTCTCGTCCCATGTGCATCCGATGTTCT GGAAATTCCATGGCTGGATCGACGACCGTATCGACGACTGGTTCCGTGCCCATGAGCGCTACCACCCAGGTGAAGTGTTGCACCGCGAGGTCAATGGCGT GCCCTGGTTCGCCCCCGGGCGCTGGGTCGAGATCGACGACCCGTGGTTGGGGGCTTCGACCCATGGCTGCGGCCCCCTGGGCAATGCCCCGGGAGAAATG TCCCTGGAGATGGATCAGGAGGTCATGAAGCTGGCCTTGCGCATCGCCCTGAGCCGCGACGAAGAGGTGCCGGACCTGCTCAAGCGGGCACCGCGGCGGC CCTGGTATGCCCAGCACTTGAAGCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCGGGGGATTCAGTTACTCAGGGCCACTTCGGCGAGAAAGCTCAAGAGCCCGTTGTATCGGCTGGTTTGCCATTGCCCGCAGCTGTGGTCGAAAAACTC GACCGGTGCCAGGCAGTGCCGGTTCTCGATCCTGAACCCGTAGAAGTCACCACAACCGTTCTCTGAAAACAGCAGGTGACGGCCGGTGATGGCCGGGTGG GCCCGGTTGATCTCCACCAGGTGGAAATCACTGCTGCTGTCCAGTGAGTAGAGCATGGCCAGGGCAAAGTAGCCGCCGCCGCACTCCTTGAGGAACCAGG TGTAATCGGCTGGCAGTTGCAGCCCCAAGGCCTGCTGCGCCTCCATGACCTGGGCCTGGCTGGCAAGGCGGTCCGACGGCAGTTCGAACCAGATCGGATG GCTGCGCTTGCGCGCCTCCAGCAGTTGCTTGAAGTCCTCGATGTTCATTGTTTGCTCCTTGCGCAGTCAGTCGTCCGTCAGGATGGTCCGGGCGCCGTGC
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| Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MRFSRRGFLTGLAVTGAAIPVAFYTQKELLRQDVRRKEEQEITPGEAKLEVALDPGVRLADHLRGIWDIEFLDANGPQSLPRKGCELLLDAGPTGRGLRG VLGRAQSLRGDGPVEFLVQGDLASVDAAKLRWRLFAGGRIAGAPSHECQVVLDEVWASWGNAGSGTLSGSLYSLQASPLAPVSAARFVARKRTFPAARDQ SGLSPALLAWLVSPQHRLFHQLWHASRDRWHSLPKDKRNSLRGLGWQPGPVKHERDARGRRKHRNASGIDFLFMHRHMLLHARSLQPDLVSWHQLPLPCA RLEQDRQAFIRYYENHDGCSVPPAWVADDDEEFTQWLHGLKSDAAFYGNFQVWESQYQDPEYLSRLTLGQFGSEVELGLHDWLHMRWADVARDPSNGMPV MEARLSSDFAGRWYQPQNDFLGDPFSSHVHPMFWKFHGWIDDRIDDWFRAHERYHPGEVLHREVNGVPWFAPGRWVEIDDPWLGASTHGCGPLGNAPGEM SLEMDQEVMKLALRIALSRDEEVPDLLKRAPRRPWYAQHLKL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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