Pseudomonas sp. RIT357, BW43_RS00490

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT357 contigs9, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGGGGTTTGTCGAGCGTGCGGTGGCACAGCCGCATATCCGCCTGATCACCGGTGGCAAGGCGGTAGACGGCAATGGGTTCTTCTTTGAGCCGACGGTAT TGGCCGATGCGCAGCAAGACGATGAAATCGTGCGCCGCGAGGTGTTTGGGCCAGTGGTGTCGGTGACTAAGTTCACCGACGAGGCACAGGTGTTGGGCTG GGCCAATGATTCGGACTACGGCTTGGCGTCGTCCGTATGGACCGCCGATGTAGGCCGCGCCCACCGTTTGGCCGCGCGGTTGCAGTATGGCTGCACGTGG GTGAATACCCACTTCATGCTGGTCAGCGAAATGCCCCATGGCGGTCAGAAACTATCGGGCTATGGCAAGGACATGTCCATGTATGGGCTGGAGGACTACA CCACCGTTCGCCATGTGATGTTCAAGCACTGATTAAGCGCCTCCCCGGCACCTGCCTTGGGTGCCGGGTCCTACAACAATAAAATCTCAGGTTCCCACCA
DNA Sequence for Gene
>BW43_RS00490
ATGGACATCACCCGCCGCGACTTCCTCAACGGCGTCGCCATTACCGTTGCCGCAGGCATGACCCCACTGCAACTGCTCCAGGCCGCACCCGATGGCCGCT ACTACCCCCCTGCCCTTACCGGCCTGCGCGGCAGCCATGTCGGCTCGTTCGAAGTGGCTCACCAGATGGGCTGGGAAAAGAAAGTGTTCGACACCGAGAA ATTGCCGATCACCGAGGATTACGACCTGGTGGTGGTCGGGGGTGGCTTGAGCGGTTTGTCGGCGGCATGGTTCTACCGGGAAAAGCACCCCAAGGCGAAG ATCCTGATCCTGGAAAACCACGACGACTTCGGCGGCCACGCCAAGCGCAATGAATTCCAGGCCGGTGGCCGCATGATCATCGGTTACGGCGGCAGCGAGG CGTTGCAGTCGCCGAACCATCTGTACAGCAAGGAAGTGAACGGGCTGTTGAAGAAGCTCGGGGTTGATATCAAGCGCTTCGAAACCGCCTTCGACCGCCA GTTCTACCCCAACCTGGGCCTGTCGCGCGGTGTGTTTTTCGACAAGGAAAACTTCGGCGAAGACAAACTGGTGACCGGCGACCCGACGCCCATGGTGGCC GACGATATTGCGCCGGACCAACTGCATGCGCGGTCCATCAGCGACTTCATCAATGACTTCCCCCTGCCTGCAGAGGATCGCCAGGCGCTGATAGACCTGC ACATGGCGCCAAAGGACTACTTGCCAGGTAAGACTGCCGAAGAAAAGGCCGACCATCTGGCGGCGACCAGCTACCGCAATTTCCTGCTCAAGGACGTAGG GTTATCGGAAGGCGCGGTGAAGTACTTCCAAAGCCGTACCAATGACTTCATGGCGCTGAGCATTGATGCCGTGGCAGCGGCCGATGCCTATAGCGTAGGT TTCCCCGGGTTTGCGGGCATGAACCTGGCACCGATCAGCGAAGAAGCCGCAGCGGAAATGGAAGAGCCCTACATCTACCATTTCCCGGATGGCAACGCCT CGGTGGCGCGGTTGCTGGTGCGCAGTCTGATCCCAGGCGTAGCACCGGGGCACACCATGGACGACATCGTGCTGGCTACCTTTGACTACGCCAGGCTCGA CCAACCCAAGGCGGCGGTACGGCTGCGCTTGAACAGCACCGCCGTCAGCGTGCGTAACGTCGATGGCGGTGTGCATATCGGCTACAGCCGCGGCGGCCAA CTCGCACAGGTGCGCGGCAAACGCTGCATCCTGGCGTGCTACAACATGATGATTCCGTACCTGCTCAAAGACCTGCCAGCGCCCCAGGCCCATGCCTTGA GCCAGAACGTGAAATACCCGCTGGTGTACACCAAGGTGGTGATCCGCAATTGGCAGTCCTTTCAGAAACTGGGGGTGCATGAAATTTACGCGGCGACCCA ACCGTACAGTCGCATCAAACTGGACTACCCGGTGAGCATGGGCGGCTACGATCACCCACGGGACCCGACGCAGCCGATTGGCCTGCACATGGTCTACGTG CCCACCAGCCCCAACAGCGGTATGAACGCCCGCGACCAGGCACGCGCCGGGCGGGGCAAGCTGTACGGGCAGACGTTCGAGCAACTGGAGGCGCAACTGC GTGACCAACTGCAACGCATGCTCGGGCCGGGTGGATTCAAGCACGAGACGGATATTCTGGCGATCACGGTCAACCGCTGGTCACACGGGTATGCGAGCTT CTCCAACAGCTTGTTTGATAACGCAGATGAGAGCGAAGCGTTGATGAATCTTGCGCGCAAACCTGTAGGCCATGTGAGCATCGCCAACTCGGATGCGGCG TGGAGCGCGTACGCCCATGCAGCGATTGATGAGGCTTTTCGGGCAGTGAGAGAGGTGGGCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCGAAATAGTGTGGCTAAAAGACGTCTTGTGGTGAGCGGGCTTGCCCCGCGCTGGGCTGCGAAGCGGCCCTGAAGCCAAACGCCGCACGTTTTCAGACG GCCTGTGTGGTTTTCATGGGGGCCGCTTCGCGCCCCAGCGCGGGGCAAGCCCGCTCACTACAACAGCGTGCAACTCACTGACGACACAACTTGCTTCATA TGAAGCGTTGATGAATCTGGCGCGCAAACCTGTAGGGCCTGTGAGCATCGCCAACTCGGATGCGGCGTGGAGTGCGTACGCCCATGCGGCGATTGATGAG GCTTTTCGGGCAGTGAAAGAGGTGGGCTAAGTCGAAATAGTCTGGCTAAACGAAGTCTTGTGGTGAGCGGGCTTGCCCCGCGCTGGGCTGCGAAGCGGCC CTGAAGCCAAACGCCGCACGTTTTCAGACGGCCTGTGTGGTTTTCATGGGGGCCGCTTCGCGCCCCAGCGCGGGGCAAGCCCGCTCACTACAACAGCGTG
Amino Acid Sequence
>spermidine dehydrogenase
MDITRRDFLNGVAITVAAGMTPLQLLQAAPDGRYYPPALTGLRGSHVGSFEVAHQMGWEKKVFDTEKLPITEDYDLVVVGGGLSGLSAAWFYREKHPKAK ILILENHDDFGGHAKRNEFQAGGRMIIGYGGSEALQSPNHLYSKEVNGLLKKLGVDIKRFETAFDRQFYPNLGLSRGVFFDKENFGEDKLVTGDPTPMVA DDIAPDQLHARSISDFINDFPLPAEDRQALIDLHMAPKDYLPGKTAEEKADHLAATSYRNFLLKDVGLSEGAVKYFQSRTNDFMALSIDAVAAADAYSVG FPGFAGMNLAPISEEAAAEMEEPYIYHFPDGNASVARLLVRSLIPGVAPGHTMDDIVLATFDYARLDQPKAAVRLRLNSTAVSVRNVDGGVHIGYSRGGQ LAQVRGKRCILACYNMMIPYLLKDLPAPQAHALSQNVKYPLVYTKVVIRNWQSFQKLGVHEIYAATQPYSRIKLDYPVSMGGYDHPRDPTQPIGLHMVYV PTSPNSGMNARDQARAGRGKLYGQTFEQLEAQLRDQLQRMLGPGGFKHETDILAITVNRWSHGYASFSNSLFDNADESEALMNLARKPVGHVSIANSDAA WSAYAHAAIDEAFRAVREVG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site