Pseudomonas sp. RIT357, BW43_RS01145
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 734 | 754 | - |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 467 | 702 | 2.6E-74 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 286 | 449 | 4.9E-46 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 461 | 708 | 1.4E-105 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 295 | 453 | 2.16E-47 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 470 | 708 | 4.60588E-107 |
| Pfam | PF03707 | Bacterial signalling protein N terminal repeat | IPR005330 | MHYT domain | 134 | 184 | 5.3E-11 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 291 | 446 | 5.86542E-60 |
| Pfam | PF03707 | Bacterial signalling protein N terminal repeat | IPR005330 | MHYT domain | 202 | 251 | 4.6E-7 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 462 | 718 | 6.8E-96 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 285 | 452 | 1.5E-44 |
| Coils | Coil | Coil | - | - | 458 | 478 | - |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 290 | 446 | 4.9E-47 |
| Pfam | PF03707 | Bacterial signalling protein N terminal repeat | IPR005330 | MHYT domain | 73 | 125 | 3.9E-11 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 467 | 716 | 9.81E-86 |
| Coils | Coil | Coil | - | - | 262 | 282 | - |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 265 | 710 | 0.0 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 462 | 716 | 1.4E-89 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 279 | 454 | 2.1E-55 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 279 | 451 | 6.0E-61 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.