Pseudomonas sp. RIT357, BW43_RS03100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGAAAGAGCCCGGCGATTGCCGGGCTTTTTTGTGGGCGTCGACTCTGGACCGACCGGGAAGTGCGGAACTCAATAAGAGGAATGCGCCACCCAACCGGTG AGAGGAATACACCTCTCATTCAATGTCGGAGAATCAATGATGAATCCAATGTCGATGATCGGCGGCGCAGCCTCCGCGCTCTTGCCTGTCCTGGGTAAAG CGGCGGAAATAGGGATGGATGTGGTTAAGGACATATTGGGCGCCAAGGCCCCTCAGTTAGGGGCGGATCAACAGCCACCAGCCCCGCCAAAGATTGAGTT TTAATCCGCCACCCGCTTGACGCCCCTTCGCACTCGCACGCGTAACAAATAACGGCGGATCAAATCCGCCGTTTTCCTGCCCCCTGCCCGAACAAAACAT CCATCCCCTTCTCACTGCAATGTTCCTTTGACTGCCATCACCAGATTGCCAATACTCATGGCATATTGAAGGCCACCCGCATGAGACAAGGAATGCCCCT
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| DNA Sequence for Gene |
>BW43_RS03100
TTGAAGCTGGAACTCAAAAACAGCTTGTCGGTGAAGTTGCTACGGGTTGTGCTGCTGTCGGCATTGATCGTGGGCGTTGCGCTGAGCGTGGCGCAGATCG TTTTCGATGCCTACAAGACGCGCCAGGCCGTGGCCGAAGATGCCCAGCGCATCCTCGACATGTTCCGCGACCCCTCGACCCAGGCTGTCTACAGCCTGGA CCGCGAGATGGGTATGCAGGTGATTGAAGGCCTGTTTCAGGACGATGCCGTGCGCATGGCCTCCATCGGCCATCCCAATGAAACCATGCTCGCGGAAAAA AGCCGCGCTTTGCAGCATTCCTCCAGCCGCTGGTTGACCGACCTGATTCTGGGACAGGAGCGCACGTTCACCACCGCATTGGTCGGCAAAGGCCCCTACA GCGAGTACTACGGCGACCTGAGCATCACCCTCGACACCGCCACCTATGGCAAAGGCTTTATTGTCAGCTCAGTGATCATCTTTATTTCCGGGGTATTACG CGCATTGGCCATGGGCCTGGTGTTGTACTTGGTGTATCACTGGCTGCTGACCAAGCCGCTGTCGCGGATTATCGGGCACCTGACGTCGATCAACCCGGAC CGCCCCAGCGAACACAAGATCCCGCAGCTCAAGGGCCATGAACGCAACGAATTAGGGTTGTGGATCAATACCGCCAATCAGTTACTCGAATCTATCGAAC GTAATACCCATCTGCGCCACGAAGCAGAAAGCAGCCTGCTGCGCATGGCCCAGTATGATTTCCTGACCGGCCTGCCGAATCGCCAGAAACTGCAGGAGCA ACTGGACAAGATCCTGATCGACGCCGGCCGCCGTCAGCGCCGCGTAGCGGTGTTGTGCGTGGGGCTGGATGATTTTAAAAGCGTAAACGAGCAGTTCACC TACCAGGCCGGCGATAAATTGCTACTCGCCCTGGCCGACCGTCTGCGGGCCCACAGCGGCCGCCTCGGCGCGCTCGCCCGCTTGGGGGGTGACCAGTTCG CCCTGGTACAGGCCGATATCGAACAGCCTTATGAAGCCGCCGAACTGGCGCAAAGTATCCTCGACGATCTGGAAGGGGAATTCGCCCTCGACCACGAACA GATTCGCCTGCGGGCCACCATCGGCATCACCCTGTTCCCGGAAGACGGCGACAGCACCGAGAAGCTGCTGCAAAAAGCCGAACAGACCATGACCCTGGCC AAGAGCCGTTCGCGCAACCGCTATCAGTTTTATATCGCCAGCGTCGACAGCGAGATGCGCCGTCGCCGTGAGTTGGAGAAAGACCTGCGGGAAGCCCTGG GACGTGACCAGTTTCACCTGGTGTACCAACCGCAGATCAGCTATCGCGACCAGCATGTGGTCGGTGTGGAAGCGCTCATCCGCTGGCAACATCCAGAACA CGGCTTGGTGCCGCCGGACCTGTTTATCCCGCTGGCCGAACAGAACGGCACCATTATTGCGATCGGCGAATGGGTGTTGGACCAGGCTTGCCGGCAATTG CGCGAATGGCATGACCAGGGCTTCATCGACCTGCGCATGGCGGTCAACCTGTCCACCGTGCAGTTACACCACGCCGAATTGCCGCGGGTGGTCAATAACC TGATGCAGATTTACCGTTTACCGCCGCGCAGCCTGGAGTTGGAAGTTACCGAAACCGGGCTGATGGAAGACATCAGCACCGCCGCCCAACACCTGCTGAG CCTGCGCCGCTCCGGGGCGTTGATCGCCATCGATGACTTTGGCACCGGCTATTCATCGCTCAGCTATCTCAAGAGCCTGCCGCTGGACAAGATCAAGATC GACAAAAGCTTCGTCCAAGACCTGCTGGACGACGACGACGATGCCACCATCGTGCGGGCGATTATCCAACTGGGCAAAAGCCTGGGCATGCAGGTCATCG CTGAAGGCGTGGAAACTGCCGAGCAAGAGGCCTACATCATCTCTGAGGGCTGTCATGAAGGTCAGGGCTACTACTACAGCAAACCCTTGCAGGCCCGGGA GCTGGCAGTTTTTCTGAAGCAGGCTGAGCGTAATAACGCAGCCATTCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGTGGCAAAACGATACTGAATATTTCCCGCGTTTAACCCTTTACACAAAATGCAAATCTTTCGCATTATGTTGCAGTTTTGCGCGCCCCCGCGTGCCCTA TTAACAACCGAAGCAGGATGTTCGCCATGATTCGTATGCCCCTGGCCACCGCCAGTCTGCTGGCCATTGCCATTTCTCTCGCCGGTTGCGGCGAAGGTAA AGACAAGGCCGCAGCGCCCCAGGCGCCGACCCCGGCCGCCAGCACCACCGCTCCAGCGGCTGCCACTCCTGCCGGTCAGGTCGACGAAGCGGCTGCCAAG GCCGTTGTCGCGCATTACGCCGATATGGTCTTCGCGGTGTACAGCGATGCCGAATCCACCGCAAAAACCCTGCAAACCGCGATCGACGCCTTCCTCGCCA AGCCCAACGACGAAACCCTGAAAGCCGCCCGTGCCGCTTGGGTTGCAGCGCGCGTGCCGTACCTGCAGAGCGAAGTGTTTCGCTTCGGCAACACCATCAT
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| Amino Acid Sequence |
>diguanylate cyclase
MKLELKNSLSVKLLRVVLLSALIVGVALSVAQIVFDAYKTRQAVAEDAQRILDMFRDPSTQAVYSLDREMGMQVIEGLFQDDAVRMASIGHPNETMLAEK SRALQHSSSRWLTDLILGQERTFTTALVGKGPYSEYYGDLSITLDTATYGKGFIVSSVIIFISGVLRALAMGLVLYLVYHWLLTKPLSRIIGHLTSINPD RPSEHKIPQLKGHERNELGLWINTANQLLESIERNTHLRHEAESSLLRMAQYDFLTGLPNRQKLQEQLDKILIDAGRRQRRVAVLCVGLDDFKSVNEQFT YQAGDKLLLALADRLRAHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEGEFALDHEQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KSRSRNRYQFYIASVDSEMRRRRELEKDLREALGRDQFHLVYQPQISYRDQHVVGVEALIRWQHPEHGLVPPDLFIPLAEQNGTIIAIGEWVLDQACRQL REWHDQGFIDLRMAVNLSTVQLHHAELPRVVNNLMQIYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIISEGCHEGQGYYYSKPLQARELAVFLKQAERNNAAIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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