Pseudomonas sp. RIT357, BW43_RS03680

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT357 contigs7, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCTCAATGGCGAGGCCCAGGTGCAAGTGCAGCGCGGTGATGTCGACCTGAGCAACACTTTCGACGATGCCCGCGTACGCCTGCGCGCCGGCGAAAGTATC CGCATCGGCCCCAAAGGCTTCGGCCAACCGGCCAAGCTGGACGCCAATAAGGACCTGGCCTGGGTGCAAGGCCGGCTGATTTTTGAAAACTGCCCGATGA GCGAAGTGCTCGCCGAGTTGCGCCGCTATTACCCCGGCTGGATCGTCAACACCAACGACCAACTCGCCAGCGTCGCGGTCACCGGCAATTACCGACTCGA TCAACCCCTGGACGTCGTGCGCTCACTGGCGCACATCACCTCTGCCAAGCTCTCGGAATACCCGGCGCTGGTCATCCTGAACTAAATGAGAATTATTTTT ACTCGATAACCTTCGGCGGTACGTCTCGTCTTAGCCAATGCAACTGATTCCTATTTGATTCGGTTCGCAACTATAAGATTCGTCCCCCGGAGCGCTTTCG
DNA Sequence for Gene
>BW43_RS03680
ATGTCCTCTCGTTTCAACCGCCGGTCTTCTTCGCCCGTCCTGTCCTTGTTGACTGCCGCCATCCTGCTGGCCGGCGCGCCGGCCATGGCCGCCACCGCTG CCGAACCGGTTTCGCGCAGCCAGGGCAACTACGCCTTCAGCATCGAACAGCAGCCGCTGGTCTCGGCGCTCAACGCCTTTACCGCCGTGACCGGCTGGCA AGTCGGCCTGCCCGCAGAGCTGGGCCAGGGCGTGTCGTCTCCTGGCGCACGCGGCCCGTTGTCGCCAGAAAAAGCGTTGGACCGGCTGTTGGTGGGGACC AACCTGAGCTACCGCAAACTGGGCAATAACAACATCGTGCTGGAAAAGCGCGCAGCGGGTAGCACCCTCAACCTGCAACAGGTAACCATCAGCGCAACCC GTAACGCGCAGGATGTGAACAGCGTGCCGAGCACCGTCAGCGTGCATGAACGTGAGGAACTGGACCGCCAGAACGTCAACAACATCCGGGAACTGGTGCG CTACGAGCCCGGCGTCTCGGTGGGCGGCGCTGGTACACGAGCAGGTAATGCCGGCTTCAACATTCGCGGCATCGATGGCGACCGTATCCTTACTCAAGTG GACGGTGTGGAAGTGCCGGGCAACTTCTTCAACGGCCCCTACGCTAAGACTCGCCGCAACTACGTCGACCCGGAAATCGTAAAGCGCGTGGAAATCCTGC GCGGGCCGGCGTCGGCCCTCTACGGCAGCAGCGCCATCGGCGGCGCCGTCAGTTACTTCACCCTCGACCCGGTTGACATCATCAAGCCAGGCCAAGACTT CGGCGCCCGCCTGAAGACCGGCTACAGCTCCGCCGACGAAAGTTGGCTGACCTCTGGCACCTTCGCCGGCCGCGTTCAAGACTTCGACGGTTTGCTGCAC CTGAGCCAGCGCAACGGTCACGAAACTGAGTCCTACGACGGCAACAACGCCACCGGCCTGGATCGCACAGGCGCCAACCCGGAAGAAGCGCGCACCACTA ACATCCTGGCGAAGCTCGGCTGGAACTATGGCGATGACAACCGCCTGGGTCTGACGTACGAGAAGTACAAGGATGATCGCGACGTCAACCTGAAGAACGC GGTGGGCGGCCCGTTCATCGGCGGCCGAGGCTTCAACCTCTACCGTGATCGTCGTGGTAACGACACCATCACCCGTGAACGTTTCGGCCTGGAAAACAGC TTCGCCCTTGAGTCGCCGATTGCCGACCGCATCAAGACCAGCGTCAATTACCAGATCGCCAAGACCGACCAGACCACCGCCGAAATCTATCAATCCGGTC GTCGCGTCCTGCGCACACGCGACACGCTCTACCAGGAAAAACAGTGGGTTTTCGATGCACAGTTGGACAAAGCGTTCAGCCTCGGTGAAACCGATCACCA AGTGACCTACGGCACCACCCTCAAGCAGCAGAAAGTCACCGGCTCGCGCGAGGGCAGCGCCACCTGCGTGGCCGTCGGCAGCGGTTGCACCGCCATCGGC GCGCCCAGCCCGATGGCCTCCGATAGCGTGAAGAAGGCCAGCGACTTCCCCGACCCGACCATCAACACCTATTCGCTGTTCGCACAGGACCAGATCACTT GGGACAAATGGACCTTCCTCCCCGCCGTGCGCTATGACTACACCCAGCTCAAACCCAAGCTGACCCAGGCATTCCTCAACACCGTCAACCCGACAGGTGC GGAAACGGTGAGCGACAAGAAGAAAACCTGGCACCGCGTGACGCCCAAGTTTGGCCTGACCTACGCGCTGACGGACCAATACACCTGGTTCGGCCAATAC GCCGAAGGTTTCCGCACGCCGTCCGCCAAGTCGCTGTACGGCCGCTTTGAAAACTTGAACCTAGGCTACACCGTCGAACCCAATCCGGACCTCAAGCCGG AGACCAGCAAAGGCATCGAAACCGGGATTCGCGGCAAGTTCGACGAGGGTTCCTTCGAGGTGGCGGTGTTCTATAACAAATACCGCGACTTTATCGACGA AGACAACGTCGTGGTCGGCGGCACTGCCGAGCAGTTCCAAGCCGTCAATATCAAGCGCGCCAGCGTCAAGGGCGCCGAAGCCAAGGGCCGCCTGAACCTG GATGCATTCGGTGCCCCACAAGGCCTATACACCCAGGGTGCGGTCTCCTATGCCTACGGTCGCAACGACCAAAACGGCGAACCGCTGAACAGCGTCAACC CGCTCAAGGGCGTGTTCGGCCTGGGCTACGACCAGGACAATTACGGCGGCCTGCTGAGCTGGACCCTGGTGAAGAAGCAGAATCGCGTAGACAGCTCCAC CTTCCACGCGCCGGACGGCGACACCAGCGGCCCATTCAAAACCCCAGGCTTCGGCGTTGTCGACCTGACCGCCTACTACAAAGTCACCAGCGATGTGACC ATCAACGGCGGCCTCTACAACCTCACCGACAAGAAGTACTGGAACTGGGATGACGTACGCAGCTACGACAGCGTCGGCGAAGCCGCGGTAACCGGCCCGG CCAACCTCGACCGCCTGACCCAGCCCGGCCGCAACTTTGCGATTAACGTGATCTGGGATATCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCAAGCCCCTCTCACCTCGTCGAAATTTCAACGACGAGGTGAGGATTTTTTACTGTGCCGCGTCTTCTTGTTCGTCTAGTTGATAACCGCTCTCTTTCGG GCACCAAGGCGCTCCCCTTCTCAAGGACTTTTTCATGACCGCTTCTCCTAACGCAGAACGTCCAAGCCTGCGCTCCCAGCGCCTGAACCAGATCACCAAC GAGCCGCACACCAAGCTGGATGCACTGGTAAAGGCCCATGCCCCGTTCGAAACCCAGGCCAACTTTGCCCGGTTCGTGGTGGCGCAGTACCTGTTCCAGT CGGAACTGGTGGCCCTGTACAACGACGCCGAACTGATCAAGATCGTGCCTGACCTCGCCGCACGCTGCCGCGCCGAAGCCGCCAAGCTGGACCTCGCCGA CCTGGACACCGAAGTGCCGGCTGCGGTGGCCGGTGCAGTGAGCAACCCGAGCAAAGCCGAAGCCCTCGGCTGGCTGTTCGTCTCGGAAGGCTCCAAGTTG
Amino Acid Sequence
>TonB-dependent receptor
MSSRFNRRSSSPVLSLLTAAILLAGAPAMAATAAEPVSRSQGNYAFSIEQQPLVSALNAFTAVTGWQVGLPAELGQGVSSPGARGPLSPEKALDRLLVGT NLSYRKLGNNNIVLEKRAAGSTLNLQQVTISATRNAQDVNSVPSTVSVHEREELDRQNVNNIRELVRYEPGVSVGGAGTRAGNAGFNIRGIDGDRILTQV DGVEVPGNFFNGPYAKTRRNYVDPEIVKRVEILRGPASALYGSSAIGGAVSYFTLDPVDIIKPGQDFGARLKTGYSSADESWLTSGTFAGRVQDFDGLLH LSQRNGHETESYDGNNATGLDRTGANPEEARTTNILAKLGWNYGDDNRLGLTYEKYKDDRDVNLKNAVGGPFIGGRGFNLYRDRRGNDTITRERFGLENS FALESPIADRIKTSVNYQIAKTDQTTAEIYQSGRRVLRTRDTLYQEKQWVFDAQLDKAFSLGETDHQVTYGTTLKQQKVTGSREGSATCVAVGSGCTAIG APSPMASDSVKKASDFPDPTINTYSLFAQDQITWDKWTFLPAVRYDYTQLKPKLTQAFLNTVNPTGAETVSDKKKTWHRVTPKFGLTYALTDQYTWFGQY AEGFRTPSAKSLYGRFENLNLGYTVEPNPDLKPETSKGIETGIRGKFDEGSFEVAVFYNKYRDFIDEDNVVVGGTAEQFQAVNIKRASVKGAEAKGRLNL DAFGAPQGLYTQGAVSYAYGRNDQNGEPLNSVNPLKGVFGLGYDQDNYGGLLSWTLVKKQNRVDSSTFHAPDGDTSGPFKTPGFGVVDLTAYYKVTSDVT INGGLYNLTDKKYWNWDDVRSYDSVGEAAVTGPANLDRLTQPGRNFAINVIWDI
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site