Pseudomonas sp. RIT357, BW43_RS04155 (hscA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT357 contigs7, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGCGCTACCGAGAGTTGGCGCGTGGGGTGCATCCGGACCGCTTCGCTGACGCTTCCGAGCGTGAGCAACGCCTGGCCCTGCAGCAGTCGGCCAGCCTCAA CGAGGCCTATCAGACACTGAAGAGTCCGCCAAAGCGCGCGCGTTACCTGCTCGCCATGAACGGCGGCGAGTTGCCGATTGAAGTCACGGTTCACGATCCC GACTTCCTGATGCAGCAAATGCAGTGGCGCGAAGAGCTCGAAGACCTACACGACGAGGCCGATGTGGCCGGTGTCGCCGTCTTCAAGCGCCGTCTGAAAG TGGCCCAGGATGAGCTCAACGAAAGCTTCGCAGCCTGTTGGGATGATGCAGCGCAACGTGAACAGGCTGAACGCCTGATGCGACGTATGCAGTTCCTCGA CAAGCTCACCTACGAAGTGCGCCAGCTAGAAGAGCGCCTCGACGATTAACCCAGTGCTGCCCGTGATGCACGCCTGATAGACAGATAAGACCTGATTACC
DNA Sequence for Gene
>BW43_RS04155 |hscA
ATGGCATTACTGCAAATCGCCGAACCCGGCCAAAGCCCTCAACCGCACCAGCGTCGCCTGGCGGTCGGGATTGACCTGGGCACCACCAATTCCCTGGTCG CTGCCCTGCGCAGTGGCCTGTCCGAACCGCTGCCGGACGCTGATGGGCAGGTCATCCTGCCCTCGGCCGTGCGCTATCACGCTGATCGCACCGAGGTCGG TGAGTCTGCCAAGTTGGCGGCATCTAGCGATCCTTTGAACACTGTGCTGTCTGTCAAGCGCTTGATGGGGCGTGGCTTGTCCGACGTCAAGCAGCTCGGC GACCAACTGCCGTATCGCTTTGTCGGCGGCGAATCCCACATGCCTTTCATCGATACTGTCCAGGGGCCGAAAAGCCCGGTGGAAGTGTCGGCTGATATCC TCAAGGTGCTGCGCCAGCGTGCAGAAACGACCTTGGGCGGCGAATTGGTCGGTGCAGTGATCACGGTTCCAGCTTATTTCGACGACGCACAGCGTCAAGC CACCAAGGATGCGGCGAAGCTTGCCGGCCTCAACGTGCTGCGCCTGCTCAACGAGCCGACTGCTGCTGCTGTGGCCTACGGTCTGGACCAGCACGCCGAA GGTCTGGTTGCCATTTATGACCTGGGCGGCGGCACTTTTGATATTTCGATCCTGCGCCTGACCGGCGGTGTGTTTGAGGTGCTGGCTACTGGTGGCGACA GCGCGCTGGGCGGCGATGACTTCGACCACGCGATCGCAGGCTGGATTATCAGCAGTGCCGGCTTGTCCGCGGACTTGGATCCAGGCGCACAGCGCAACTT GCTGCAAACTGCTTGTGCCGCTAAAGAAGCGCTGACTGATGCTGCCTCTATTGACGTGTCTTACGGCAACTGGTCGGCACCGCTGACGCGCGAAGCCTTC GATGCGTTGATCGAGCCAATGGTCGCCCGCAGCCTCAAGGCGTGCCGTCGCGCCGTACGTGATTCCGGTATCGAGTTGGAAGACGTCGGTGCCGTGGTCA TGGTGGGTGGTTCGACCCGTGTGCCGCGTGTTCGTGGGGCAGTTGCCGAGGCTTTTGGTCGCGAGCCACTGACCGAAATCGACCCCGATCAAGTAGTCGC CATCGGCGCAGCGATCCAGGCAGACACCTTGGCCGGCAACAAGCGCGATGGTGGCGAACTGCTGCTCCTCGACGTGATTCCGTTGTCGCTGGGGCTGGAG ACCATGGGCGGCTTGATGGAGAAGGTGATTCCGCGCAACACCACCATCCCCGTCGCCCGCGCCCAGGACTTCACCACTTATAAAGACGGCCAGACGGCCA TGATGATTCATGTGCTGCAAGGCGAGCGCGAGCTGATCAGTGACTGCCGCTCCCTGGCGCGTTTCGAATTGCGTGGTATCCCTGCGATGGTAGCCGGTGC TGCGAAAATTCGTGTGACCTTCCAAGTCGACGCCGACGGCCTGCTTAGTGTCGCGGCCCGTGAGCTGGGGTCGGGTGTTGAAGCCAGCATCCAGGTGAAG CCTTCCTACGGCCTCACCGACGGCGAAATCGCCAAGATGCTCAAGGACTCGTTCCAGTACGCCGGTGACGACAAGGTCGCCCGTGTGCTGCGCGAACAGC AAGTGGATGCGCAGCGCCTGCTTGAAGCGGTGCAGGGCGCCCTTGAGGCTGACGGCGAACGCCTGCTGGATGCCGAAGAGCGCATGGTCATCGACCTGCA GATGCATGAATTGGCCGAACTGATGAAAGGCACTGATGGTTATGCTATCGAGCAACAGACCAAGCGCTTGTCGCAAGTGACCGATGCCTTTGCCGCCCGC CGTATGGACCAGACGGTAAAAGCCGCCCTGGCGGGACGCAACCTGAATGAAATCGAGGAATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTAATGCCGCAGGTCATTTTTCTGCCACACGCCGAGCATTGTCCGGACGGTATGGTTGTGGAGGCTGAGACCGGCAAGTCCATCCTCGAAGTTGCCCATG ACAACCACATCGAAATCGAAAGCGCTTGTGGTGGCGTGTGCGCCTGTACCACTTGTCACTGCATCATTCGCGAGGGTTTCAATTCGCTTGAAGAAGCCGA CGAGCTGGAAGAGGACTTTCTCGATCGTGCCTGGGGCTTGGAAGCGCAATCGCGTCTAAGCTGTCAGGCAAAGGTGGGAACTGAGGACATCACTGTCGAA ATTCCGAAATATTCGCTCAACCATGCGGCCGAAGCGCCGCATTGATTCAAGGAACTGTCATGAGCCTGAAATGGGTTGATGTACAAGAAATCGCTATACA ACTTGCTGAAGCTCATCCTGAGGTCAATCCTCTTACCGTGAACTTCGTCAAACTGCGTGATCTCGTAATGGCGCTGCCGGAATTCGATGACATCCCGGAT
Amino Acid Sequence
>chaperone protein HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGLSEPLPDADGQVILPSAVRYHADRTEVGESAKLAASSDPLNTVLSVKRLMGRGLSDVKQLG DQLPYRFVGGESHMPFIDTVQGPKSPVEVSADILKVLRQRAETTLGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAYGLDQHAE GLVAIYDLGGGTFDISILRLTGGVFEVLATGGDSALGGDDFDHAIAGWIISSAGLSADLDPGAQRNLLQTACAAKEALTDAASIDVSYGNWSAPLTREAF DALIEPMVARSLKACRRAVRDSGIELEDVGAVVMVGGSTRVPRVRGAVAEAFGREPLTEIDPDQVVAIGAAIQADTLAGNKRDGGELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARAQDFTTYKDGQTAMMIHVLQGERELISDCRSLARFELRGIPAMVAGAAKIRVTFQVDADGLLSVAARELGSGVEASIQVK PSYGLTDGEIAKMLKDSFQYAGDDKVARVLREQQVDAQRLLEAVQGALEADGERLLDAEERMVIDLQMHELAELMKGTDGYAIEQQTKRLSQVTDAFAAR RMDQTVKAALAGRNLNEIEE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site