Pseudomonas sp. RIT357, BW43_RS05375
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCCCACGCCGCTACATCCAACCGTCCCATGTGGTGCGTATCGCGCCGATGATTTACGGCGGTTCTTTCCGCCGCGACTCGAACCTCGCCGCCGAACAT GCGAGCAAGGTGCGATCTGCCGGCAAACTCGGTTACTACTGGCAGCTGTTCGCCGGGCTGGGCTGGACCAGCATCCATTGGCTGCACAAGATCCGCCAGC CCACCCTGGTGCTGGCGGGGGACGACGACCCGCTGATCCCCTTGATCAATATGCGCATGCTGGCTTGGCGCATCCCCAATGCGCAATTGCACATCATCGA TGACGGCCACCTGTTCTTGATCACCCGGGCCGAAGCCGTGGCGCCGATCATCATGAAGTTCTTGGAAGAGGAGCGAATGCGTGCAGTGATTCATCCACGC CCGGCGGTGTAAGGACGCAACGCCGCGCAACTTGCCAGGAACCGACTATGGTTCTGAATTGGCGTGCCTGTTTGATGGCTAGACGAAGGAGTGTTGGCTC
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| DNA Sequence for Gene |
>BW43_RS05375
ATGCGAGAAAGACCCGTGACGAACCCGGCGCCTACCCCTGCTGCGTTCATCAATGCGCAAAATGCGATCACCGGCCTCAGGGGCAGGGACTTGCTCTCGA CCTTGCGCAGCGTCGCCGCCCACAGCTTGCGCAACCCGGTGCACACCGCACGGCATGCCTGGGCCTTGAGCGGCCAGTTGGGTCGGGTGCTGTTGGGCGA GACCGTGCACGAGCCCAACCCCCATGACAGCCGCTTCAGCGATCCCACCTGGAAGCTCAACCCGCTCTACCGCCGAAGTCTGCAAGCCTATTTGAGCTGG CAGAAGCAGACACGTCACTGGATCGACGACAGCGCCCTGAGCGCCGATGACCGGGCCCGCGCACACTTCGCCTTCTCCCTGCTCAACGATGCCGTCTCAC CCTCCAACACCCTGCTCAACCCGCTGGCCGTCAAAGAGTTGCTCAACTCCGGCGGCAACAGCGTGGTGCGCGGTGTGGCCAATTTGTTCGAAGACCTGCT GCACAACAACGGCTTGCCACGCCAAGTGAGCAAGCACGCGTTCGAAGTTGGCAAGACGGTTGCCACCACCCCTGGCTCGGTGGTGTTTCGCAATGAGCTG CTGGAGCTGATCCAGTACAAGCCCATGAGCGAAAAACAGTACGCCAAGCCACTGCTGATCGTGCCGCCGCAGATCAACAAGTACTACATTTTCGACTTGA GCCCGGCCAACAGCTTTGTGCAGTACGCGCTCAAAAACGGACTGCAGACCTTTATGGTCAGCTGGCGCAACCCGGATGTGCGCCACCGCGAGTGGGGCCT GTCCACCTACGTTGCGGCGCTGGAGGAAGCGCTTAACGTATGCCGGGCAATCACCGGCGCCCGAGAAGTCAACCTGATGGGTGCCTGCGCCGGCGGCCTG ACCATCGCCGCCTTGCAAGGCCACTTGCAGGCCAAGCGTCAGCTACGCCGCATCTCCAGCGCCAGCTACCTGGTGAGCCTGCTGGACAGCCAGATCGACA GCCCCGCCACCCTGTTCGCCGACGAGCAAACCCTGGAAGCCGCCAAACGCCGCTCCTATCAAGAGGGAGTGCTGGATGGGCGCGACATGGCCAAGGTCTT CGCCTGGATGCGCCCCAATGACCTGATCTGGAATTACTGGATCAACAACTACCTGTTGGGCAAGGAACCGCCGGCCTTCGACATCCTGTACTGGAATAAC GACAACACGCGCCTGCCCGCCGCGCTGCATGGCGACCTGCTGGACTTCTTCAAGCACAACCCGCTGAGCCATCCCGGCGGCCTGGAGGTATGCGGCACGC CCATTGACTTGCAAAAGGTCACCGTGGACAGCTTCAGCGTGGCCGGCATCAACGACCACATTACGCCGTGGGACGCGGTGTATCGCTCCACACAATTGCT GGGCGGCGAGCGGCGCTTCGTACTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCTCCGGGCAACCCCAAGGCCAACTACGTCGAGAACCAGAAA CTGAGCAGCGACCCACGCGCCTGGTACTACGACGCCAACCATGTCGAAGGCAGTTGGTGGCCGCAATGGCTGGAGTGGATCCAGCAGCGCTCGGGCGTGC AACGCGAAACCCTCACGGCTCTGGGCAACCAGAATTACCCACCGATGGAAGCGGCGCCGGGCACCTATGTGCGAGTGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCAACGATCACATTAAGAAGACTGGATGAAGACCCGCGACCGTATCCTTGAATGCGCCCTGCAGTTGTTCAACCAAAAGGGCGAGCCGAATGTATCAA CCATGGAGGTGGCCAATGAAATGGGGATCAGCCCCGGCAACCTCTACTACCACTTCCATGGCAAGGAGCCGCTGATCATTGGGCTTTTTGAGCGTTTTCA AGGTGAGCTGGCGCCGTTGCTTGATCCGCCCGCAGACGCACAATTGAAGGCTGAGGATTACTGGCTGTTCCTGCACCTGATTGTCGAGCGAATGGCCCAC TACCGGTTTCTTTTCCAGGACTTGTCCAACTTGGCCGGACGCCTACCGAAGCTTGCCAAAGGCATTCGCAACCTGCTTACAGCGCTCAAACGTACCCTGG CATCATTGCTGGCGCGATTGAAGGCAGCGGGGCAAGTGGTCAGTGACACGCAGGCACTGGGGCAATTGGTGGAACAGATCACCATGACCTTGCTGTTTTC
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MRERPVTNPAPTPAAFINAQNAITGLRGRDLLSTLRSVAAHSLRNPVHTARHAWALSGQLGRVLLGETVHEPNPHDSRFSDPTWKLNPLYRRSLQAYLSW QKQTRHWIDDSALSADDRARAHFAFSLLNDAVSPSNTLLNPLAVKELLNSGGNSVVRGVANLFEDLLHNNGLPRQVSKHAFEVGKTVATTPGSVVFRNEL LELIQYKPMSEKQYAKPLLIVPPQINKYYIFDLSPANSFVQYALKNGLQTFMVSWRNPDVRHREWGLSTYVAALEEALNVCRAITGAREVNLMGACAGGL TIAALQGHLQAKRQLRRISSASYLVSLLDSQIDSPATLFADEQTLEAAKRRSYQEGVLDGRDMAKVFAWMRPNDLIWNYWINNYLLGKEPPAFDILYWNN DNTRLPAALHGDLLDFFKHNPLSHPGGLEVCGTPIDLQKVTVDSFSVAGINDHITPWDAVYRSTQLLGGERRFVLSNSGHIQSILNPPGNPKANYVENQK LSSDPRAWYYDANHVEGSWWPQWLEWIQQRSGVQRETLTALGNQNYPPMEAAPGTYVRVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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