Pseudomonas sp. RIT357, BW43_RS05390

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT357 contigs6, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGAGGTCGCCGAGTAAGCGCTTCCAGCAGTTCCCCAGCCGTGCCGAAAGAGCCGATCACATCAAGGTCAGGCGCAGCGCTCAAGCCCAGCTCAATTCCCT GCCGAACCATCTCATGGTCATCTAAAAGCATGACGGTGTACGTAGTGGGCATAGAAGTAGGCATACAAAAAACCCGCATAAGTAAATACAACACCGCACC TTTGAATACGCGTGCTGCAATTACGGTATACCCAGTTACAGTCAGGCATCAATACTACGGGGCAATAAGCGCAAGTCCTTCAGCACGCTCCTACAGAAAA ACATTAGTCCTACAGAAAAGTCTTAAGCTAAAAAGTTTTCGAATAATTACGAAATAAAACTCAGCACTTTTCTATAGATGAAGTTCGCACTCCCAGACAA ATTATGCCTTCCGCCATTCGAGTAGAACTCGAAACACACTTCAGGCGTCACGCCTTAACCTGCGGCGGGCTTCTTTTACAAATTCACGACTGGGATGACC
DNA Sequence for Gene
>BW43_RS05390
ATGAAAATCACCGCTCTTTCCCCTGTTGCGGCAGTACTCGCTCTGACTGCGGCACTGTCACAGCCGGCATTCGCCGCCAACGATGGCGTTATCAATTTCA CCGGCCTGGTGACCGATGTGACCTGCACCGTCGAGGGCGCAGCGCCGGGCACAGGCGCCGTCGTCAAAGACGTTAACCTGGGTGGCGTCTCTGCCTCTCG CCTGGCGACGGCGGGTAGTCGCGCCAACCTGACGGGTTTCACCATTCGCATTGGCGGGCCTGGCGAAGGCAGTTGCACCAATGGCCGTACCGCCATGGTG GCTTTCGACCCAACCAGCCCGGCCATTGACGTGGCCACCGGCCGCTTGAACATCGACGGCCACGATGATCCCTCCGACACCACCAATGCCAAGAACGTAC AGGTAGAAGTAACCAATCGTGATGGCTCCCCGATCAATGTCTACACCGAGAAATCGGAGGGCGTAGTGATCGTCGACAACCAGGCGATTATCCCACTGGC AGCGCAGCTGTATGCCAGCGGTGCCGCCACCGAAGGCACGGTTAAAACCCGCGTCGGCTTCCTGATCGAATACGCCGAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GAGGTGGACACGTCTGTACCCACAGACCTTGTACGCCCAGGACCTGCCATCGCCGCGCAGGTCCACTTCCAGCCTCGAAGAGACTTCAGATGATTAAACG AATGGCTCGCCGCGCCCTCGCCACCTGCGCTTTTGGGCTGATATCGCTTCACGCGCTCAGCACACAGGCGGGCGTGATTGTCCATGGCACGCGCGTGATC TACCCCGCAGAACAACAGGAAGTCGTTGTGCGGCTGGAAAACAAGGGCAGCCGCCCGGCGCTGGTGCAGGCCTGGCTGGATACCGGTGATCGACATTCGA CGCCGGCGACTGCGCAGACCCCGTTCACCCTGACGCCGCCATTGTTTCGTATCGAGCCATATCAACAGCATGCCTTGCGCCTGCGCTATTCCGGTGAACC GCTACCCGAGAATCGCGAAAGTCTGTTCTGGTTGAACGTACTGGAAGTACCACCGCTTTCCGCCGATGCCGCGCAAAACAACCAGATCGAATTGTCGTTC
Amino Acid Sequence
>fimbrial protein
MKITALSPVAAVLALTAALSQPAFAANDGVINFTGLVTDVTCTVEGAAPGTGAVVKDVNLGGVSASRLATAGSRANLTGFTIRIGGPGEGSCTNGRTAMV AFDPTSPAIDVATGRLNIDGHDDPSDTTNAKNVQVEVTNRDGSPINVYTEKSEGVVIVDNQAIIPLAAQLYASGAATEGTVKTRVGFLIEYAE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site