Pseudomonas sp. RIT357, BW43_RS06305
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTTGAGCACGTAGGCAAGCTCGCTGCTGCGATACGCGGGGTTGATGTTGACCAGGATCACGCCGAGCTTGGCGCTGGCGATCTGGCTGATGCACCACTC CGCGCAATTGGGCGCCCAGATGCCCAGGCGATCGCCGGTCTGCATGCCCAATGCGAGGAACGCGCGGGCATGCAGTTCAACCGTCTCGGCCAATTGCTGC CAGGTATAACGACGTTGCTGATGAAGCACTACCAGCGCTTCGCCCTGAGGGTATTGCGCGACGGTGCGATCGAAGGCCTGGCCAATGGTCATGGCCAACA AGGCCTTGTCCTGAGCGCCACGGCTATAGCTCGGCTGCGGTTGATCCATAACGACCCCTGTTGTCTTTTTTGTAGGTTGACGTAAACGTAAACTACGATT GACAGCACCACAACGCAAGCTTACGTTAACGTAAAGGTGAGCGCCCTCCTCTGATGAGCCCTCCATACAACAACAACGCTGATATTTAAGGTGCCTGTCC
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| DNA Sequence for Gene |
>BW43_RS06305
ATGAGTTACCCGTCCCTGAACTTCGCCCTCGGTGAAACCATCGACATGCTGCGCGACCAGGTGCAGTCCTTCGTGGCCAAGGAGATCGCGCCTCGCGCGG CTCAGATCGACAGTGACAACCTGTTCCCCGCCGACCTGTGGCGCAAGTTCGGTGACATGGGCCTGCTGGGCATTACCGTGGCCGAAGAATACGGCGGCGC CGGCCTGGGTTACCTGGCCCATGTGGTGGCCATGGAGGAGATCAGCCGTGGTTCTGCGTCTGTAGCGCTGTCCTACGGCGCACACTCGAACCTGTGCGTC AACCAGATCAACCGCAACGGTAATCACGAACAGAAACTCAAATACCTGCCCCAATTGATCAGTGGCGAACACGTCGGCGCTCTGGCCATGAGCGAGCCGA ACGCCGGGTCCGATGTGGTCTCTATGAAACTGCGCGCCGACAAGCGCGGCGACCGCTACGTGCTCAACGGCAGCAAGACCTGGATCACCAATGGTCCCGA CGCCAACACCTACGTGATTTATGCCAAGACCGACCTGGAAAAAGGCCCTCACGGCATCACTGCGTTTATCGTCGAGCGCGACTGGAAGGGCTTCAGCCGC AGCAGCAAATTCGACAAGCTGGGTATGCGCGGCTCCAACACCTGCGAACTGTTTTTCGATGACGTCGAAGTGCCCGAGGAAAACATCCTCGGGGTGCTCA ACGGCGGCGTAAAAGTACTGATGAGCGGCCTCGATTACGAGCGTGTGGTGCTGTCCGGCGGCCCTACCGGGATCATGCAGGCCTGCATGGACCTGATCGT TCCCTACATCCACGACCGCAAGCAGTTCGGCCAGAGCATCGGCGAGTTCCAGCTGATCCAGGGCAAGGTCGCCGACATGTACACCCAACTCAACGCCAGC CGCGCCTACCTCTACGCCGTGGCCCAGGCCTGCGAGCGCGGCGAAACCACGCGCAAGGACGCCGCCGGGGTGATCCTCTACAGCGCCGAACGCGCCACGC AAATGGCCCTGGACGCGATCCAGATTCTCGGCGGCAACGGCTACATCAATGAATTCCCCGCCGGCCGCCTGCTGCGCGACGCCAAACTGTATGAAATCGG CGCCGGCACCAGTGAGATTCGGCGGATGCTGATCGGTCGTGAACTCTTCAACGAAACTCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGAGCGCCCCATGGCCACCTTGCACACTCAACTCAACCCGCGTTCGGCGGAGTTTGCCGTCAACAGCGCGGCGATGCGCCAACAGGTCGACGCCCTGCA CACCTTGCTCGCCCATGTGCAACAAGGCGGCGGCGCCAAGGCGCAGGAGCGGCACACCTCACGTGGCAAATTGCTGCCCCGTGAGCGCATCAATCGCCTG CTCGATCCGGGCTCGCCGTTCCTTGAACTCAGCCAATTGGCCGCCCATCAGGTGTACGGCGAAGACGTGCCTGCAGCCGGGGTAATCGCGGGGATCGGTC GCGTGGAAGGCGTCGAATGCATGATCGTCGTCAACGACGCAACGGTGAAAGGCGGTTCGTATTACCCACTGACCGTGAAAAAGCACCTGCGCGCCCAGAC CATCGCCGAGCAGAACCGCCTGCCGTGTATCTACTTGGTGGACTCTGGCGGCGCCAACCTGCCGCGCCAGGATGAAGTATTCCCCGACCGCGAGCACTTC
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPSLNFALGETIDMLRDQVQSFVAKEIAPRAAQIDSDNLFPADLWRKFGDMGLLGITVAEEYGGAGLGYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGNHEQKLKYLPQLISGEHVGALAMSEPNAGSDVVSMKLRADKRGDRYVLNGSKTWITNGPDANTYVIYAKTDLEKGPHGITAFIVERDWKGFSR SSKFDKLGMRGSNTCELFFDDVEVPEENILGVLNGGVKVLMSGLDYERVVLSGGPTGIMQACMDLIVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAQACERGETTRKDAAGVILYSAERATQMALDAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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