Pseudomonas sp. RIT357, BW43_RS06635
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGTCATCGACTTCAAGCACACCCTGATCCTGCTGACCACCAACGTCGGCACTGACCTGATCGCCCGCCAGTGCCGTGACCCGCTGGCAATGCCAGAAC CGCAAGCCCTCGCAAAAGCCTTGCGTGAGCCGTTGCTGGAGGTCTTCCCGCCGGCTTTGCTCGGACGCCTCGTGGTGATCCCGTATTACCCCCTCAGCGA CGCCATGCTCGACCGCATCATCCGCCTGCAACTGGAGCGGATCAGACAGCGCATCGCTGACAGCCACAAGATTCCCTTCACGTACAGCGATGAAGTGGTG CAGTTGATTGCCAGCCGCTGCACCGAGCTGGAAAGTGGTGGGCGGATGATTGACTCAATCCTGACCAACTGCTTGCTGCCAGCAATCAGCCGCGAGTTCC TCGATCGTCTGTTACAGGGCATCCCGGCCAGCCAGGTTGGGGTCAGCGTGGAATACGGCGAGTTTGCCTATGTCTTTTCCGAGTCCGCGAGGTAGTCCCT
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| DNA Sequence for Gene |
>BW43_RS06635
ATGGCAACCAGTCAAATGCATCGTGACATTCAGGTCAGCAGTGTGCTCGGCGACGATGTGCTGCTGTTTCGCAGCATGCAGGCATTCGAGGGGCTGTCTC GTCTCAGTGAATACGAGGTGGAGCTGTACAGCGAACGCGCCGACCTGGACATCAACGACTTGCTCGCTACGCCGATGAGCATTGCGGTGGACGTGCCCAA GGGCGGTAGTCGTTACTTCAGCGGGCATGTGAGCCACTTCTCCATAACCGGTCGTCAAGGGCGCTATACCACGTGCAAAGCGGTGTTGAGGCCGTGGTTG TGGTTCCTGACACTGGCCAGCGACTGCCGTATTTTCCAGGGCCTGAGCGTGCCGCAGATCCTCAACCAGGTGTTCGCGCCTTACAGCATTGCCGATGTCG ACACCTCGGGCTTGAGTGCGGACTACGCGGCACTTAACTATTGCGTGCAATACCGCGAGAGCGATTTCAACTTTGTCAGCCGGCTGATGGAGCAGGAAGG TATTTACTACTTCTTCAAAAGCGCTGCTGGCCGTCATACCTTGGTACTTGCCGATTCCTGCGGCGCGCATTCGCCGGCGCCGGGCTATGCCCAACTGCGC TACATGCCGTCCCAGGATCACGCCCTGCGCGAAAGCGAGGTGATCTACGCCTGGCACATGAGCGGCGAGGTGGCGCCGGGCGGCTATACCCTGAAGGACT TCGACTTCGAAAAACCCAGCGTCAATCTGATGGTCAAGTCGGCCATGCCTGGTGACTACCCGCAGTCTCGTCACGAACGTTACGACTATCCGGGTCGATA CACCGAGCGCAAACAGGGCGAAACCTATGCCCGCACCTTGATTGAATCGCTGCAGACCGGCGCCGGTCGGATCAGCGGTGCCACTCGTGCCCGGGGGCTG TTCCCGGGAGCGTTGATGACCTTGGCCGAGCACCCGCGCAGTGAACAGAACGCGCAGTGTTTGCTGCTGGAAGCGCGTTACACGTTGTCGTTAGACACCT ATGAGCCGACGCCACCGACCGAGCCCGCGCCCGTGCTGACTTGCGAGTTCGTGGCCATGCCGCACCAGCAGCCATTTCGAGCACCTTGCGTATCGCCCAA GCCACGGATGCACGGTCCGCAGACCGCCAAGGTGGTGGGCAAACAGGGCGAAGACATCTGGACCGACAAATACGGACGGATCAAGGTGCAGTTCCACTGG GACCGCGAGGGCAAGGGCGACGAAAACAGCTCATGTTGGGTCCGAGTAGCCCAGGGCTGGGCCGGCAAGCGTTGGGGCAGCCTGCATATCCCGCGTATCG GCCAGGAAGTGGTGGTCAGCTTTCTCGACGGCGACCCCGACCAGCCGCTGGTCACCGGCAGCGTCTATAACGCGGAATCGCTGCCGCCCTATGCACTGCC AGAAAATGCCACCCGCTCGACCCTCAAGACCCATTCTTCAAAGGGCGGTGGTGGCTACAACGAACTGCGCTTCGAGGACAAGAAGGGTTCGGAGCAGGTG TTCCTGCACGCCCAGAAAAACTTCGACCAGCGAGTGCTCAAGGACGCCCTGGACTGGGTAGGCGGCGACCGTCACTCCAGAATCGACCAGGACCTGCGCG AGAAGGTCGGCGGTGATCGTCATTCCTCTGTGGACGGCAACCGCAATGAAAAAACCAGCGGTGCGGTGTCGATGAGCGCCGGCAGCGAGATGATTATCGA GGGCGCCATGAAGACGGGTGTTACCGCCGGTACCGATGTGCATATCAAGGGCGGGGCGAACGTGGTGATCGAAGCCGGCGCGAGCATCACCTTGAAGGTC GGCGGGGCCTTTATGACCTTTTCTCCAGGTTCGATTCTCGCTTCGGCCATGCCTGTGCCCTTGCCTCAGGCCGCAACCGCTGCCACCGCCGCGGCATTGG CAGCGGCCACCGGGCCTGCGGGTGTGCCGCTGCCGCCCAAGGAGGCCGACGATGGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGTTGTCGGCTCTGTCTGCTTCTACCGTTGCCCATATTGGAAGAACTTAATGTCCTGGAAACACAAAGTGGTTTGGTCCGAAGGCATGTTGTTGCAGC CTCAGCATCTGCAACAACATGACCGTTTCCTGCAAACCCAGCTGGAGGCACGGGTCACGGCGTTGCGTGCGTATGGCTGGGGCTTTTCGGCGTTGGACAT TGACCCGCAGCAACTGGCTCTGGGCAAGGTATCGTTGCTTTCATACAGCGGTATATTCCCGGATGGAACGCCTGTCGGCCTGCCATTCGATGATGAAATG CCGCCGCCCCTGACCATCCCCGATGATGCGCGCGACCTGACCGTGGTGTTGGCATTACCGAGCTTACGTCCCGGGATCCCGGAGGTTGACGACAACCCCA GTATCGAAAATTTCGCCCGACTTCGCAGCGCTGAATACGAAGTCTGGGACAGTAATGGACTGGACAGCAGTGCGCTGATGAGTGTCGGCAAGTTGCGCGT
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MATSQMHRDIQVSSVLGDDVLLFRSMQAFEGLSRLSEYEVELYSERADLDINDLLATPMSIAVDVPKGGSRYFSGHVSHFSITGRQGRYTTCKAVLRPWL WFLTLASDCRIFQGLSVPQILNQVFAPYSIADVDTSGLSADYAALNYCVQYRESDFNFVSRLMEQEGIYYFFKSAAGRHTLVLADSCGAHSPAPGYAQLR YMPSQDHALRESEVIYAWHMSGEVAPGGYTLKDFDFEKPSVNLMVKSAMPGDYPQSRHERYDYPGRYTERKQGETYARTLIESLQTGAGRISGATRARGL FPGALMTLAEHPRSEQNAQCLLLEARYTLSLDTYEPTPPTEPAPVLTCEFVAMPHQQPFRAPCVSPKPRMHGPQTAKVVGKQGEDIWTDKYGRIKVQFHW DREGKGDENSSCWVRVAQGWAGKRWGSLHIPRIGQEVVVSFLDGDPDQPLVTGSVYNAESLPPYALPENATRSTLKTHSSKGGGGYNELRFEDKKGSEQV FLHAQKNFDQRVLKDALDWVGGDRHSRIDQDLREKVGGDRHSSVDGNRNEKTSGAVSMSAGSEMIIEGAMKTGVTAGTDVHIKGGANVVIEAGASITLKV GGAFMTFSPGSILASAMPVPLPQAATAATAAALAAATGPAGVPLPPKEADDGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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