Pseudomonas sp. RIT357, BW43_RS08005
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTGGCGCAATCATCTCTGGCGGCAAAGGCACTGCAGACGAGAAGTTTGCGGCTCTGGAAGACGCAGGCGTTAAAACTGTGCGTTCGCTGGCAGACATC GGCAAGGCTTTGTCCGAGCTGACCGGTTGGGCTGTCAAGTAAGCTTCGCGCTTAGCTGACGCTTTACCAGCAAAGGCCACCTTCGGGTGGCCTTTGTGCG TTTGGATGTACTCGATCCTATGTAAGGGGCCGTGCGACGATTCAACTAGCCCTCACACATTTGTTTGTATTGCCAACATAAGTATGAAAACGCGACATCA AGATGTCGCTTATCGGACAGTTCGCCCCGCAACAGTGCGTTTGTCAGCCTGATTCTGTAACCTACCCGCCTCTTTATGCGCTGGCCCCCAAAAGGAAGCC GCGCGCTAGACCGGTCGGCCCCATCAGGGCCGGCAGTATTTCCCTCATCCACAGGGAATCCCTCTCTAAATTCCGATTCAGTAGTGTGGTATTTCCCGAA
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| DNA Sequence for Gene |
>BW43_RS08005
ATGAAAGTGTTGAAAAGCCAGGATATCCTGGCGTTGGGCTTCATGACCTTTGCCCTGTTCGTGGGCGCCGGTAACATCATCTTCCCGCCTATCGTTGGCT TGCAGTCCGGACCTCACGTCTGGATGGCGGCGTTGGGCTTCCTGATCACCGCAGTGGGTTTGCCAGTGGTCACCGTGATTGCCCTCGCCAAGGTCGGCGG TGGTATGGATGCGTTGAGCAGCCCGATCGGCAAGATCGCCGGTGGCCTGCTTGCGGCGGCTGCGTATCTGGCGGTAGGGCCGCTGTTCGCTACCCCGCGT ACCGCGACGGTGTCCTTTGAAGTCGGCTTGGCGCCGCTCACCGGTGAAAGCCCGTTGGCGCTGTTCCTCTATAGCTCCGTTTACTTCCTAGTGGTGTTCT TTGTGTCCCTGTACCCAGGGCGCCTGCTGGACACTGTCGGTCGTTTCCTTGCGCCGTTGAAGATCATCGCGTTAGCCATCCTCGGCATCGCTGCGTTTGC CTTGCCGGCCGGTGAGGTGGGTGTCGCCACTCCGGAATACGTCGCTGCACCGTTCTCCCAAGGTTTTATCAATGGTTATCTGACCATGGACACCCTTGGT GCTCTGGTATTCGGAATTGTGATCGTCAACGCTATCCGCTCCCGTGGTGTTGATTCGCCCAAGCTGATCACCCGCTACGCGATCATCGCTGGCCTGATTG CTGGCGTTGGTCTTGCGCTGGTGTACGTCAGCCTGTTCCGCCTTGGTGCGGGAAGTCATGAAGTGGCCGCTGGTGCGGCTAATGGCGCAGCCGTACTGCA CGCGTACGTGCAACACACCTTCGGCTCCCTGGGCAGTGGTTTCCTGGCGGTATTGATTTCCTTGGCATGCCTGGTTACCGCGGTTGGCCTGACCTGCGCT TGCGCCGAGTACTTCAGCAAAATACTGCCGCTGTCCTACAAGACCCTGGTAGTGATCCTGGCGCTGTTCTCGTTGTTCGTGTCCAACCTGGGCCTGACTA AGCTGATTGCCTTTTCGATACCGGTGCTTACCGCGATCTACCCGCCGTGCATCGTGCTGGTGGCCCTGAGCTTCTGCAAAGACTTCTGGCAGGAACAGGG CCGGATCGTTGGCCCGGTGATGCTGGTGTCGTTCATATTTGGCTGCATTGATGCGCTGAAGGGCGCGGGCTTTGCCGACTGGCTGCCGTCGCAACTGGCG CATCTGCCGCTGAGCGAGCAGGGCCTTGCGTGGTTGGTGCCGTCGGTAATGACCTTGGTCGTGGCTGTGGTGGTTGATCGTATGCTTGGCAAGCGTAGCG AAGCGATCGCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACCGCTTCAAGGCTGCACAGAAATGCCCCGTATCAATCAATACGGGGCATTTTTTATGCTTGGTAGACTACGACCTTCTAAAGTTGGAGCGCGGTCGAT GTAGGAGGGGGCTTGCCTCAGACGGCACTGTGCCATTCAACAGATGCAGTGACTGTCATCAAGCATTCGGGATCAAAGCCTCTCCCCCAATGTTGACCAC GTTTGCAAAAACTTTCTTGATATAGGACCCGCATGTCGTTCGTCGAAACCAATCAAATCCACCTGCTTGCCGCCCTCTGGTTCGTTCTGTGTTGGGGCGG CTACACCCGTTATGCGACCTGGAAAGCTCGGGACACTGCGTGCCTGGCCAGTGTGCTGCATTTGTATCGTGAGGACTGGATGCGTCGCATGCTGCTGCGC GACAACCGCATTGCCGACGCCAGCGTGATCGGCAACCTGGAGCGCAATGCTTCGTTCTTTGCCTCCAGTACCCTCATTATCCTCGCTGGTATTCTCACCG
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| Amino Acid Sequence |
>branched-chain amino acid ABC transporter substrate-binding protein
MKVLKSQDILALGFMTFALFVGAGNIIFPPIVGLQSGPHVWMAALGFLITAVGLPVVTVIALAKVGGGMDALSSPIGKIAGGLLAAAAYLAVGPLFATPR TATVSFEVGLAPLTGESPLALFLYSSVYFLVVFFVSLYPGRLLDTVGRFLAPLKIIALAILGIAAFALPAGEVGVATPEYVAAPFSQGFINGYLTMDTLG ALVFGIVIVNAIRSRGVDSPKLITRYAIIAGLIAGVGLALVYVSLFRLGAGSHEVAAGAANGAAVLHAYVQHTFGSLGSGFLAVLISLACLVTAVGLTCA CAEYFSKILPLSYKTLVVILALFSLFVSNLGLTKLIAFSIPVLTAIYPPCIVLVALSFCKDFWQEQGRIVGPVMLVSFIFGCIDALKGAGFADWLPSQLA HLPLSEQGLAWLVPSVMTLVVAVVVDRMLGKRSEAIA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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