Pseudomonas sp. RIT357, BW43_RS09115
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCCGGTCTGCTTGAAGTAGTCGAGGTCCAAGTGATCGGTGCCGATGGTGCAGGTGCCGACAAAACGCACCTTTGAGCCCTCCAGCAACGCGCGATTGAC GTTAGTCACCGAGCGCACCAACAGTACGTCAGCCTGCTCGACCGTGGCGCGATCAAGGGAACGGCCGGGCACCCGGCGAATCTCGCCAAATCCTTGGAAG AAGGCATCGAGCAGCGGGATATTTTCGTCGGCAACAATCAGCATGGCAGGCTCCTTTGGCGGATCAGCAGTGTACAGGGATGCGATCTGCAATGTGGGAG GGGGCTTGCCCCCGAATAGCCGTGTGTCAGCGACTATCCAGTGACTGACACTCTGCAATCGTGGGCAAGCCCCGTCCCACCAGGGATATGCGGTGCCCTG GGAGGTCGCTTACAAATCCCTAACACAGGTTTTTTCCTGACCATGGCGTCAAGGCGTAGAATCCGCCGTCCTTGCGCTATTTTCTATTGGACACCCGCAC
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| DNA Sequence for Gene |
>BW43_RS09115
GTGAACACTGCCGCCACCCCCCTCACCCGCCCCGCCCGTATCAGTCGGGAAGTGCGCGACCTGCTGACGCTCGCTCTGCCAATCATGATCGGCCAACTGG CTACCACCGCCATGAGTTTTGTCGACGCGGTGATGGCCGGACGTGTCAGCCCCCAGGACCTGGCGGCAGTGGGGTTGGGCAACTCGATCTGGATCCCGGT GTACTTGCTGATGAGCGGCACGCTGCTGGCCACCACACCAAAAGTCGCTCAGCGCTACGGTGCCGGCAAATTCAGCGAAATCGGACCGCTGGTGCGCCAG GCCTTGTGGCTGGCGGTGGTCGTGGGGATCCTCGGAGGATTGCTGCTGCTGTGCGCCGAACCGATCCTGCATGCCATGAAGGTCGAGCCTGACCTGATCG TGCCGTCCATGGGCTACCTGCACGGCATCGCCGCGGGGATGCCAGCGATTGCGCTGTATTACGTGCTGCGCTGTTTCAGCGATGGCCTTGGCCGTACGCG ACCGAGCATGGTCATGGGCCTGGTCGGCCTGGCGCTGAATATTCCGCTGAACTACATCTTCATTTACGGCCACTTTGGCGTGCCGGCCATGGGCGGCGTG GGCTGTGGCTGGGCCACCGCCATTGCGATGTGGGTGATGATGCTCGGCCTGGCCGTCTGGACGCGCTGGGGCCCGGCCTATCAGAGCAGTGAATTGTTCA AGCGCTTTGACTGGCCGCAATGGGCCGTGATCAAGCGTGTATTGGGGATTGGTCTGCCGATTGGCGTCGCGATCTTTGCCGAGTCGAGCATTTTTGCAGT GATCGCCCTGTTGCTCGGCAGCCTCGGCGCCACGGTGGTGTCCGGGCATCAGATTGCACTGAACGTCAGCTCCCTGGTGTTCATGATCCCCTACTCCCTG AGCATGGCCGTCACCGTGCGCGTCGGTCAGGCCCTGGGGCGTGGCGAAGCACGTGAAGCGCGCTTCGCCGCCGGGGTCGGCATGGGCACCGCGCTGGCAT ATGCCTGCCTGTCGTGCAGCCTGATGCTGTTGTTTCGCGAGCAGATCGCGACGATCTACACCCCGGATCCGGTGGTGATCCACCTAGCGTCGACGCTGAT CGTATTCTCGGCGCTGTTTCAGTTCTCGGACTCGATCCAGGTCACTGCCGCTGGCGCATTGCGGGGCTATCAGGACACCCGGGTGACCATGGTGCTGACG TTGTTCGCCTACTGGGGCGTGGGGTTGCCGGTGGGCTACGCCCTGGGGCTGACTGACTGGCTCGGCGCGCCCAGCGGCCCAAGCGGTTTGTGGCAAGGGC TGATCGTGGGCCTGAGCTGTGCGGCGGGGATGTTGCTGGTACGCCTGGCGCGCAGTGCACGCCGGCGTATCCGGGCGGATAAGGCGCGCGCTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGCCTTTTTGCGAATCCAGTACAGGTAGGTGCCGGCCTGTTCCTGCTGATCCACCAATTCGTGGTCAAGGAACACGCAGAACTTGGGAATATCGCGAC GGGTTGACGGGTCGGTCGCGATCACTTTGAGCAAGCCGCCTGCCGGCAGGTCGCGGATGTGCTGGTGCAGCATCATCACCGGTTCCGGGCAGTTGAGGCC TGTTGCATCGAGAACGCCGTCTACGGGGCTGTCGTTAATATCGCTCATTGATTACTCCTCGTTAACGGGCCTTGGTTTTCTTCGCATCCACCAGCCGACG CAGGTGGCACGTCACTTCCTCACGGTCGTGGTAAAGCTGCTTGCAACCGATCTCCACGCGGATGCCGCGCGCCTTGAAACCCTCTTCGATGCGCTCCAGC AGACGCTTCACTTCGGCATAACGCTGCTTCATCGGCAACTTCAGGTTCACCACCGCCTCGCGGCAATATCCTTCGCCAATCCAGGTTTCCAGCAGCGCGG
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| Amino Acid Sequence |
>multidrug transporter
MNTAATPLTRPARISREVRDLLTLALPIMIGQLATTAMSFVDAVMAGRVSPQDLAAVGLGNSIWIPVYLLMSGTLLATTPKVAQRYGAGKFSEIGPLVRQ ALWLAVVVGILGGLLLLCAEPILHAMKVEPDLIVPSMGYLHGIAAGMPAIALYYVLRCFSDGLGRTRPSMVMGLVGLALNIPLNYIFIYGHFGVPAMGGV GCGWATAIAMWVMMLGLAVWTRWGPAYQSSELFKRFDWPQWAVIKRVLGIGLPIGVAIFAESSIFAVIALLLGSLGATVVSGHQIALNVSSLVFMIPYSL SMAVTVRVGQALGRGEAREARFAAGVGMGTALAYACLSCSLMLLFREQIATIYTPDPVVIHLASTLIVFSALFQFSDSIQVTAAGALRGYQDTRVTMVLT LFAYWGVGLPVGYALGLTDWLGAPSGPSGLWQGLIVGLSCAAGMLLVRLARSARRRIRADKARA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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