Pseudomonas sp. RIT357, BW43_RS11840
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCAGCAGACCATTCGTCACGGCCGTCAGGGCCAGATGCCGGCGCAGGAACTGTTGCAGGGCAACGACAAAGTGCACCTGCTCGCAGCTTACGTGTACA GCCTGTCTCACAACGCTGATGGTGCAATGCCAGAAAGCGCAGCTCAGTAACATCTGACTGCCGCCCCAATTTGGGGCGGCAGCTCTACCGCGCTACGCGA CCAAGTGTCACACCCCTCCAAAGCACAACTTTCCCCTACTGCCATTCGGGTCTACGCTTGCTTGCACAGCGGACCGATCTTGGCGTACGCGACGACAGTC GTTGCGACCCCCAAAATTTCCTGTCCACTCGATCAGCTTTCGATTTCTGATTTTGTCCTTACGCCAAACATGGAAAGGGCGCAGAATCTGGCGTGGAACG CATTGATCCAGGTCAGCCATTGCGTTGCAATGGCCCCTCGCTTTCTACATACTTGCGGCCGATTTTACCTATAAAAAAACCTAAACCGTGGAACCTTAGA
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| DNA Sequence for Gene |
>BW43_RS11840
ATGAGCACAGCAATCAGTCCGACTGCTTATAACTATAAGGTAGTCCGCCAGTTCGCCATCATGACGGTGGTCTGGGGGATCCTTGGCATGGGGCTCGGGG TGTTCATCGCCTCGCAACTGGTTTGGCCGGAATTGAATTTCGACTTGCCATGGACGACCTTCGGTCGCCTACGCCCGCTGCACACCAACCTGGTGATTTT CGCCTTCGGCGGATGTGCATTGTTTGCCACCTCCTACTATGTCGTGCAGCGAACCTGCCAGACGCGACTGATCTCCGATGGCCTCGCCGCCTTTACCTTC TGGGGTTGGCAGGCGGTCATCGTCGGCGCCATCGTCAGCCTGCCACTGGGCTACACCACCACCAAGGAATACGCCGAGCTGGAATGGCCGATCGCCATTT TGCTGGCGATTGTGTGGGTGACCTACGGTGCGGTGTTCTTCGGCACCATCGTCAAGCGCAAAACCAAGCACATCTACGTGGGCAACTGGTTCTACGGTGC GTTCATCGTGGTCACGGCGATGCTGCACATCGTCAACCACGCGTCGCTGCCGGTCAGCCTGTTCAAGTCCTACTCGGCATATGCCGGCGCGACGGACGCG ATGATCCAGTGGTGGTACGGGCATAACGCCGTAGGCTTTTTCCTCACCACCGGTTTTCTGGGGATGATGTACTACTTCGTGCCGAAACAGGCCGAACGTC CTATTTACTCGTACCGTTTGTCCATCGTGCACTTCTGGGCATTGATCACCCTCTACATCTGGGCCGGCCCGCACCACTTGCACTACACCGCACTGCCGGA CTGGGCGCAGTCCCTGGGCATGGCGATGTCGATCATCCTGTTGGCTCCGAGCTGGGGCGGCATGATCAACGGCATGATGACCCTCTCGGGTGCCTGGCAT AAATTGCGCACCGACCCGATCCTGCGCTTCCTTGTGGTATCCCTGGCGTTCTACGGCATGTCGACCTTCGAAGGGCCGATGATGGCGATCAAGACCGTCA ACTCGCTCTCCCACTACACCGACTGGACCATCGGCCACGTTCACGCCGGTGCCCTCGGTTGGGTGGCGATGATCTCCATCGGTGCGCTGTACCACATGAT CCCCAAACTGTTCGGCCGTGCGCAGATGCACAGCGTCGGGCTGATCAACACGCACTTCTGGCTGGCCACCATCGGCACCGTGCTCTACATCGCTTCGATG TGGGTCAACGGCATCACCCAAGGCCTGATGTGGCGTGCGATCAACGATGACGGCACCCTCACCTACTCGTTCGTCGAAGCGCTGCAAGCCAGCCATCCGG GCTACATCGTCCGCGCCCTGGGCGGTGCGTTCTTCGCTGCTGGCATGCTGTTCATGGCCTACAACGTCTGGCGCACCGTGCGTGCCTCGGACCCCGCAGA AGCCGAAGCCGCCGCCAAGATCGCCGTTGTGGGAGCCCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAAGCATGAAGTAGTCGAGAAGAATATCGGCCTGCTGGCCTTCTTCATGGTCATCGCCGTGAGTATCGGCGGCCTGACCCAGATCGTTCCGCTGTTTTT CCAGGACGTGACCAACAAGCCGGTGGAAGGCATGAAGCCGCGCACCGCCCTTGAACTGGAAGGCCGCGACGTCTACATCGCCAACGGTTGCGTGGGCTGC CACTCGCAGATGATCCGCCCGTTCCGCGCCGAAACCGAACGCTACGGCCACTACTCGGTCGCCGGCGAAAGCGTATGGGACCACCCGTTCCTGTGGGGTT CCAAGCGCACCGGACCTGACCTGGCCCGTGTTGGCGGGCGTTACTCCGATGACTGGCAACGTGCGCACTTGTACAACCCGCGCAACGTGGTGCCTGAGTC AAAAATGCCGGCGTACCCGTTCCTCGTGGAAAACAAGCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTCTTGCGCACCCTGGGCGTGCCCTACACC
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| Amino Acid Sequence |
>cbb3-type cytochrome c oxidase subunit I
MSTAISPTAYNYKVVRQFAIMTVVWGILGMGLGVFIASQLVWPELNFDLPWTTFGRLRPLHTNLVIFAFGGCALFATSYYVVQRTCQTRLISDGLAAFTF WGWQAVIVGAIVSLPLGYTTTKEYAELEWPIAILLAIVWVTYGAVFFGTIVKRKTKHIYVGNWFYGAFIVVTAMLHIVNHASLPVSLFKSYSAYAGATDA MIQWWYGHNAVGFFLTTGFLGMMYYFVPKQAERPIYSYRLSIVHFWALITLYIWAGPHHLHYTALPDWAQSLGMAMSIILLAPSWGGMINGMMTLSGAWH KLRTDPILRFLVVSLAFYGMSTFEGPMMAIKTVNSLSHYTDWTIGHVHAGALGWVAMISIGALYHMIPKLFGRAQMHSVGLINTHFWLATIGTVLYIASM WVNGITQGLMWRAINDDGTLTYSFVEALQASHPGYIVRALGGAFFAAGMLFMAYNVWRTVRASDPAEAEAAAKIAVVGAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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