Pseudomonas sp. RIT357, BW43_RS11965

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT357 contigs3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCAGCGTGATCTGCCGCGACGCCGCCGGCTTCAAAGGCCCGGCCCTGTTGCAGAACATCCTCGAAAGCGGCCTGCGCTTTGGCGAGATGGATATTTTCCA TCGCCACGAAAGCATGGCAGGCAACGGCGAAGTGCTGTTCTCCATGGCCAACGCAGTCAAGCCCGGCACCTTCGACCTGGACGACATCGACCTGTTCAGC ACTCCAGCGGTGAGCTTCTTCCTTGGCCTGCCAGGCCCGCGTCACCCGAAACAAGCGTTCGATGTGATGGTGGCTGCAGCCCGCAAGCTCTCCCAGGAGT TGAACGGCGAACTGAAGGACGACCAACGTAGCGTCCTGACTGCCCAGACCATCGAACACTACCGTCAGCGCATCGTCGAATTCGAGCGTCGCGCCCTGAC ACAGAAACGCTGAGGTTTGGCTTCAAGCGTTGTCGATAGAATTAAGCGCACCAACATTTGAGCAGCTTCGGCTGCTCTTTTGCTTTATGAGAGAACACCC
DNA Sequence for Gene
>BW43_RS11965
ATGACCGCCGCCCACACCCGCATCCTCGAACTGCGCGCTGAACTGGATCAGCACAACTACCGTTACCACGTCCTCGACGAGCCGAGTATTCCGGACGCCG AGTACGATCGGCTGTTCCACGAGCTCAAGGCTCTGGAAGCTGAGCATCCGGAACTGATCACGCGGGATTCGCCGACGCAGCGGGTGGGCAGCGCGGCGTT GTCGGCGTTCACTCAGGTCAAGCACGAGATCCCGATGCTCAGCCTGGGCAACGCCTTTGATGAAACCACGATGTTGGAGTTTGATCGCCGGGTGACTGAA GGCCTCGACCTGCCGGTGGGCGACCTTTTTGGCGCTGGTGCCGAGGTGGAGTACAGCTGCGAACCCAAACTGGACGGCCTGGCGGTCAGCCTGCTGTATC AGGACGGTGAGTTGGTGCGCGGCGCCACCCGAGGTGACGGTACCACTGGCGAAGACATCAGCGTCAACGTGCGCACCGTGCGCAATATCCCTTTGAAACT GCACGGCAGCGGCTGGCCGGCGACCTTGGAGGTGCGTGGCGAAGTCTTTATGTCCAAGGCCGGCTTCGAACGGCTCAATGCCTCGCAACTGGAAGTCGGC GGCAAGACCTTCGCCAACCCGCGCAATGCCGCCGCCGGCAGTCTGCGTCAGTTGGATTCGAAAATCACCGCCAGCCGCCCGCTTGAATTCTGCTGTTATG GCATTGGCCAGGTAACTGCTGACATCAGCGATACCCACATCGGGAACCTGCAGCAGTTGCAAAAATGGGGCATGCCCATCAGTCATGAACTGAAGCTGGC CAAGGGTATTCAGGATTGCCTCGATTACTACCGCGATATCGGCGAGCGGCGTAACAGCCTGCCCTATGAGATCGACGGTGTTGTCTTCAAGGTCAACAGC ATTGCTGCTCAGCGTGAATTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCCATCGCCCACAAATTCCCGGCGATGGAAGAACTCACTGAGCTGCTCGACG TTGAATTTCAGGTCGGCCGCACCGGCGCTGTCACCCCGGTAGCGCGTCTGAAGCCCGTCAAGGTCGCGGGTGTGACTGTGTCCAACGCCACCTTGCACAA CATGGATGAAGTGGCGCGTCTGGGCGTCATGATTGGCGACACCGTGATCATCCGGCGCGCCGGGGATGTGATCCCTCAAGTGGTGTCCGTAGTGCTTGAG CGACGTCCGGCCGACGCCCGCGCGGTACCGGTTCCCGAGAGCTGCCCGGTGTGCGGCTCGCACGTGGAGCGCACTCAACTGGTCAAGCGCAGCAAGGGCA AGGAAACCGTCAGCGAAGGCGCCGTGTACCGCTGCGTCGGGCGCCTGGCCTGTGGCGCTCAGCTCAAGCAGGCGATCATTCATTTTGTCTCGCGCCGGGC CATGGACATTGATGGGCTGGGTGACAAGACCATCGAGCAACTGGTGGATGAAAAACTCATCGGTTCGCCAGCCGACCTCTACACGCTCAAGTACGAGCAG ATCATCGACCTGGAAGGCTTCGCCGACATCTCCAGCAAGAAGCTGATCGCCGCCATCGAGAACAGCAAGACGCCGACCCTCGCGCGTTTTATCTACGCGC TCGGCATCCCCGACGTGGGCGAGGAGACCGCCAAAGTGCTGGCACGCTCGCTGGGGTCCCTTGAGCGCGTGCAGCAGGCGTTGCCGCCGGTGCTGACGTA CTTGCCCGACGTGGGCCTTGAAGTGGCGCACGAGATCCACAGCTTCTTTGAAGACAGTCATAACCAAGAAGTGATTGGCGCACTGCTGTCGCCTGAGAAG TGCGGCCTGCAATTGCAGGATCAGGGCGACCTCAGCGCCGAGTTCGCCGCTAGCACCACCTTGGGCGGCTTGCTCGACAAGCTGCACGTACCGTCCGTGG GCCCAGGCGCTGCGCAGAAGCTGGCGGACAAGTTCGGCAGCCTGGAAGGCGTGATCAAGGCTGACTGGCTGGACATGCGCCAGGCGCTGCCCGAAAAGCA GGCCAAGGCCGTGCGCGACTTCTTCGACAACCCGGACAACGCCCAGCACGCCTTGGCCATTGAGCAGCAGCTCAAGGACTTCGGCATGCACTGGCAAAGC GAGAAAAAGGTCGTAGAAGGCTTGCCTGAAGCCGGACACACGTGGGTACTCACTGGCTCCCTGGAGCTTATGAGTCGCGACGTGGCCAAGGAGAAGCTCG AAAGCCTCGGTGCCAAGGTGGCCGGTTCCGTCTCGGCGAAAACCCACTGCGTGGTGGCCGGGCCGGGTGCTGGTTCGAAACTGGCAAAGGCCAGCGAGTT AGGCTTGAAGGTGCTGGACGAAGAGGCCTTCGTGGCCTTTCTCGCCACGCACAACATTCCAGTCAGTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCTCACCTGTAGGCGTCCGGCTGGCCGGCGATCGCGCGCCAAGGAGTGCCATCGTCGGCACGCCTGACGCCTATAGGGATGTCATCCCATTTTTGGAAC GATCTTCGAAGGGAATTGATCTAGTCTTGGTCACCCCAGGAAGAGATCGCCATGTTCCGCTACTTCGAGCAACTCAGTTCGCGCATTGCCGCACCGTTCA TGGCCGAATCCTCGCGCAACAGCAAGGTTTGGCAATGTCGTTGCGGCCAGTCCCTATTTTTTCGCAACAGCCAATGCCTGGCATGCGCAGCGCTGCTGGG CTATCAACCCCGGCAAAACCGCTTGTCCTCGCTGCAACCCGGCCCCGTCGAAGGCACCTGGCTGCAGGACGATAACCTCGACGCCGGCGCCTTTCGCCGC TGCGCCAACCTTGACACGCCTGCCGCCTGCAACTGGCTGATTCCGGCCCACAGCACCGCACCGCTGTGCGTGGCCTGTAGTCTCAACCGCACGATCCCCG
Amino Acid Sequence
>NAD-dependent DNA ligase LigA
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELITRDSPTQRVGSAALSAFTQVKHEIPMLSLGNAFDETTMLEFDRRVTE GLDLPVGDLFGAGAEVEYSCEPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPATLEVRGEVFMSKAGFERLNASQLEVG GKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQVTADISDTHIGNLQQLQKWGMPISHELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFKVNS IAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEVARLGVMIGDTVIIRRAGDVIPQVVSVVLE RRPADARAVPVPESCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVDEKLIGSPADLYTLKYEQ IIDLEGFADISSKKLIAAIENSKTPTLARFIYALGIPDVGEETAKVLARSLGSLERVQQALPPVLTYLPDVGLEVAHEIHSFFEDSHNQEVIGALLSPEK CGLQLQDQGDLSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFGSLEGVIKADWLDMRQALPEKQAKAVRDFFDNPDNAQHALAIEQQLKDFGMHWQS EKKVVEGLPEAGHTWVLTGSLELMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLATHNIPVS
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site