Pseudomonas sp. RIT357, BW43_RS15705
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs20, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAGGAACGCATCAATATCACCTTCAAACCCGCCATCGGTGGTGCTCAGGAAGAAGTCGAGCTGCCGTTGAAACTGCTGGTGCTGGGGGACTTCACCCAG CGTGAGGACCTGCGCAAGCTCGAAGATCGCAAACCCATCGCCATCGACAAGAACACCCTTGATGAGGTGCTGGCCAAACAGGCGCTGAGCCTCACGCTGA ATGTACCCAACCGTCTCCAGGAGTGCGCCGAAGTTGAAGAACTCGCCATCCAGGTACGCATTAATTCGATGAAGGATTTCAACCCCGCAAACCTGGTGGA GCAGATCCCCGAGTTACACAAGCTGATGGCCCTGCGTGAGGCGTTGATGGCGTTGAAGGGACCGCTGGGCAACACGCCGAGCTTTCGTAAAGCCATCGAA CAGGCTCTGGCCGATGACGACTCCCGTGCCCGGGTATTGGCAGAGTTGGGCCTGAACAGCCAAATCGCCTGATATTTCTCAGTAAAAGGACACTGGTGCC
|
|
| DNA Sequence for Gene |
>BW43_RS15705
ATGACGACTCAACACACTCCGATACCTGTACACAGCACTGATGAGTGCAGCATCCTCGACAACATCATCGCTCAGACTCTGTTGAGTGCGGACGACGAGG CCTACGGCATTGCAAAGCGTGGGGTCTCGGCCTTTATTGAAGAACTGATCAAGCCGCAGAACAGCAGTGAACCGGTCAAGAAGCGTCTGGTTGACCGGAT GATTGCCGAGATTGACGAAAAGCTCAGTCGGCAAATGGATGAGATTCTTCACCACCCAAGTTTCCAGGCGCTGGAGTCCTCCTGGAAAGGCCTGCAGCTG TTGGTCGAACGCACCAACTTTCGAGAAAACATCAAGATCGAACTGCTGAATGTCTCGCGGCAAGACCTGCTGGATGATTTCGAAGACTCGCCAGAAGTGA CTCAGTCAGGGCTCTATAAGCATGTCTACAGTGCGGAATACGGTCAGTTCGGCGGCCAGCCGGTGGGCGCGATCATCGCCGACTACTTTCTGTCGCCCAG TGCCCCTGATGTGAAGTTGATGCAATACGCCTCCAGTGTGGCTTGCATGGCCCATGCACCTTTTATCGCTGCCGCCGGGCCGGGTTTTTTCGGTTTGGAA AGCTTCACCGACCTACCTGATCTGAAGGATCTCAGGGACCATTTCGAAGGCCCTCAATTCACCAAATGGCAAAGCTTCCGCCAGAGCGAAGACGCCCGAT ATATCGGTCTGACTGTGCCGCGTTTCCTGCTGCGAACGCCTTACGATCCCCTTGAATGCCCGGTCAAGACGTTTGCCTACCGAGAAACCGTGGTGAACAG CCACGAGCACTACCTATGGGGTAACACCGCCTACACCTTTGCCACACGCTTGACCGACAGTTTCGCGCGGTTTCGTTGGTGCCCTAACATCATCGGTCCG CAAAGCGGCGGCGCAGTGGAAGACTTACCCTTGCATCACTTCCACAGCATGGGCGAAATCGAAACCAAGATTCCCACTGAAGTACTGGTGTCCGACCGCC GCGAATATGAACTGGCACAAGAGGGCTTCATTGCCTTGACGATGCGCAAGGGCAGTGACAATGCCGCGTTTTTCTCCGCCAGTTCGGTACAAAAGCCCAA GAGTTTCGGCATCAGTGCCGAGGGCAAGGAAGCGGAGTTGAATTACCGCCTGGGCACTCAATTGCCCTACATGATGGTGGTCAATCGTCTGGCCCATTAC CTCAAGGTCCTGCAACGGGAGCAACTGGGGTCGTGGAAGGAGCGTACCGACCTTGAGCTGGAGCTCAACAAGTGGATTCGCCAGTACGTCGCAGACCAGG ACAACCCCAGTGCCGAGGTGCGTGGGCGGCGGCCATTGCGTGCGGCGCGCATCGTGGTCAGTGACGTTGAGGGTGAGCCTGGTTGGTACCGGGTCAGCCT GAGCGTACGACCGCACTTCAAATACATGGGGGCTGACTTCACGCTGTCCCTGGTTGGCAAGCTCGATAAAGAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAGGGGCCAAGGGGTGACCCGCAACCGAAGTCTGTTTGAGCGACTCGGGTATCCAGCTGAGCATTCAGCCTGTGGCGTGAGGTCTGTCGCAGCTCACCT GGGAAAAATGCTCAGCATCCGCGCAGGCAGTGTGCAGACACTGCCGGACTACGGAATGCCGGACCTCAATGACATGAACCAGAGTCTGCATGAGTCCTTG AGCCAGTCGCGCTTATTGATCGAGCGGTTTATCCGCGCCTACGAACCACGCTTGAAACAAGTCCGCGTGAGGTCGTTACCCCGAGGTCACGACGCTTTGG CCCTGGCGTTTGCCATCGACGCCACGCTCTCTATCGACGGGGTGACGCAACCTGTGGTGTTCACCGCGCGCCTGCGGGATGCGGGACAGGTTGAGGTCTT GCCTGATGTCCTTTAACCAGTATTACCAAAGTGAACTCAGTGCGTTGCGTCTGCTCGGGCGGCGTTTCTCCGAGCGAAATCCCGCGCTGGCGCCCTTTCT
|
|
| Amino Acid Sequence |
>type VI secretion protein
MTTQHTPIPVHSTDECSILDNIIAQTLLSADDEAYGIAKRGVSAFIEELIKPQNSSEPVKKRLVDRMIAEIDEKLSRQMDEILHHPSFQALESSWKGLQL LVERTNFRENIKIELLNVSRQDLLDDFEDSPEVTQSGLYKHVYSAEYGQFGGQPVGAIIADYFLSPSAPDVKLMQYASSVACMAHAPFIAAAGPGFFGLE SFTDLPDLKDLRDHFEGPQFTKWQSFRQSEDARYIGLTVPRFLLRTPYDPLECPVKTFAYRETVVNSHEHYLWGNTAYTFATRLTDSFARFRWCPNIIGP QSGGAVEDLPLHHFHSMGEIETKIPTEVLVSDRREYELAQEGFIALTMRKGSDNAAFFSASSVQKPKSFGISAEGKEAELNYRLGTQLPYMMVVNRLAHY LKVLQREQLGSWKERTDLELELNKWIRQYVADQDNPSAEVRGRRPLRAARIVVSDVEGEPGWYRVSLSVRPHFKYMGADFTLSLVGKLDKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|