Pseudomonas sp. RIT357, BW43_RS15720
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs20, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACATGTACCAATCACAACCTGCCTCGGCAATTGCAGGCAGGTGACATCAATCAACCCTGTGAGCAGACGCCGGAGGGGTTGTCGTTTCGCAATATCTGCG CGCCGACCGCGAGTTTTGCGCCGCCCCTTGACCAGGATTTTCTCTGGCGACTGATCAGCAACATGTCGCTCAACTATTTGTCACTGACCGATATCAACGC GTTCAAGGTGCTCCTGCAAACCTACGACGTGCCGCGTTACCACGACCGGCACGCGCAAAAGGTCAGCCAGAGAAGGTTAGGTGCGTTGCGATCCATCAGT CATAGGCCGGTCGATCGTTTGTACCGCGGAATGCCATTTCGTGGCTTGCAGATTGACCTGAGCATTGATTTCGAAGGCTTCCTCGGGAGGGGCGAAGCGT TTGTGTTCGCCTCGGTGCTGAACGAGTTCTTCGCGCTTTACGCAAGCCTCAATGCCTACCACGAACTACGTGTCATCAGCACACAAGGAGATGTGTACCT
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| DNA Sequence for Gene |
>BW43_RS15720
ATGGCCACCCCGGATGGGGCAGCAGCCCCTGCTTTGAAGGAACTGTGCAGTGCGATCCGCGAATATTCGCTGTTCCAGGCGATTTTGCAGGTGATCAAGC GCCTGCGCGACGCCCATCCGTTGCTGGATGACGACGCGCTCTATGACAGGTTGGAGTTTCAGGCCAACCCAGGTCTTGGTTTTCCCGGTCACGACATCGA TCGGGTGGAGTTTTTTGTTGAACACGGTCAATTGCGTGCGCGTCTTCGCATCAACGTTCTGGGGCTGTGTGGCGCTGGGTCGCCCTTGCCGGCGTTTTAC GGCGAGCAGGCGTTTGCCGATGAGGCGAGCGGACACGCCACTCGCGATTTTCTGGATCTGTTTCACCATCGTCTGCAACGGCTGATGCTGCCGATCTGGC GCAAATACCGTTACCAGGTGAGCTTCCAGGCGCAGGCCCGTGACGCGTTTTCCGAGCAGATGTTTGCGTTGATTGGGTTGAAGGGCCGGCAGCTGCGCAC TGCAGCGCAGTTGGACTGCAAGCGGCTGTTGCCCTACCTGGGTCTGCTTAGTCTGCGGGCGCATTCGGCGGCGGTAATCGAGACAGTGCTGCGTTACTAC TTCAAGCACGACCGCGTGTTTATTGAGCAGTGGGTCGAACGCTCGGCGGTCATTACTCCCGCGCAGTTGAACCAGTTGGGTGTTGCCAACAGCGTGCTGG GCACCGACCAGGTTTTGGGAGACCAGGTCGCCGATTGCGGTGGCAAGTTCAGGGTGCACGTACAGGGCCTGGATTGGCAGCAGTTCCACGGTTTTTTGCC GACGGGTGCGGACTATCCGCTGCTGTGTGCGTTGGTACGACTGACCGCTCGCGACCCGCTGGATTACGACCTGCGCCTGGTGCTGGACAAGGAGTCCATC AGGCCGTTGCACGTGGGTGAATACAACGTCTGCAGGCTGGGTTGGACCAGTTGGCTGGCACACGAATGCGCCGACGGTGTGGTCATCGTGGCCAACAACG CTCACTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGCTCTTGATGATGAATGTAGACCTGCAACAACTTATCCGGACGTTGACGCCTGCGGTCCGCCAAGACTTGGAGCGCTCGGCTGAGCGTTGTGTGGCGC GTGGTGGCAGGGAAGTGCTTGTAGAAGACTTGCTATTGGCCCAGCTGGAACATCGCGATGGCCTTTTAATGAGAGCCTTGGCCGACGCGGGGATCGAAGC GCAGACGCTGCAAGCAACGCTGCAGCCCAAGGGGGAGGGAAGTGCTTCACGTAACCCGGTGTTTGCCCAAGCCCTCGTGCAATGGTTGCAGCAGGCATTG TTGGTTGCTCATTTGGAGTTGCGTCAAACCGACGTGGACCATGGTGCGCTGTTACTGGCGCTGTTGCATCACCCGTTGCAACACGCAGGCAGTCGCTATT ACGCGTTGTTGAGCCGTTTGGATGCACAGCGCGTACAGGGCTTCGTGCTGAGCCAGCGCCCGGACATCATCCCCGCCGCAAGCGACGAGTCATGGCTGGC
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| Amino Acid Sequence |
>type VI secretion protein
MATPDGAAAPALKELCSAIREYSLFQAILQVIKRLRDAHPLLDDDALYDRLEFQANPGLGFPGHDIDRVEFFVEHGQLRARLRINVLGLCGAGSPLPAFY GEQAFADEASGHATRDFLDLFHHRLQRLMLPIWRKYRYQVSFQAQARDAFSEQMFALIGLKGRQLRTAAQLDCKRLLPYLGLLSLRAHSAAVIETVLRYY FKHDRVFIEQWVERSAVITPAQLNQLGVANSVLGTDQVLGDQVADCGGKFRVHVQGLDWQQFHGFLPTGADYPLLCALVRLTARDPLDYDLRLVLDKESI RPLHVGEYNVCRLGWTSWLAHECADGVVIVANNAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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