Pseudomonas sp. RIT357, BW43_RS15975
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGTCGGCCTTGAGGTTAGGCAGGCTCTGCAACAGCAGGCTCTGACCGACTTTGCCGGCCAGGTCGCCGCGCTTGAGCACGGCGCTGATGGCGCCGCCG CTGAGTTCGTCGAGTTGCTTGGCGGCCACGCCGAGCTTGCGGCCTTCGCCGATGGCGACCACGAGGGTGGCGGTTTTCAACGTTTCGGGGCTAACGCTTT TTACAACCAATTCCATTTTCGGGTCCCTTATAAAGGTCTGAGAGCCTGGTATTTGTATCCAGGCTTTAAAGCGTGGCAGCTGTGTAAACCGCCAGCGACA AAGGCCGCAGTTTGAACCTCGCCGGCGGAGCCTGACAACCCTTCGTACGCGCTTTGTACCCGCGTATGAGGTTGCGCAGTGACAGGCGCGGTCAATCACA GGATAATGCGCCATCTTTTTAATCGGCCCTGCGTAAAGGGGCTGACTCGGTATGCTTGCTTGTTTGGCCGCCTTAGCCTGACAACCCTGGAGTGTCTGGT
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| DNA Sequence for Gene |
>BW43_RS15975
TTGATTGTCTTCCGTTATCTATCCCGCGAAGTCCTGTTGACCCTGAGTGCCGTGAGTGCGGTCCTGTTGGTCATCATCATGAGTGGTCGTTTCGTCAAAT ACCTGGCCCAAGCCGCTTCGGGCGCCCTGGATCCAGGCTCGTTGTTCCTGATCATGGGCTTTCGCCTGCCGGGGTTCCTGCAACTGATCCTGCCGCTGGG CCTGTTCCTCGGGATCCTGTTGGCCTACGGTCGTTTGTACCTCGAAAGCGAAATGACTGTGCTCTCGGCCACCGGCATGAGCCAGCAGCGTCTGCTCGGC ATGACCATGATCCCGGCAGCCGGCATCGCGCTTATCGTCGCCTGGCTGAGCCTGAGCCTGGCCCCCCAGGGCGCCATGCAGTTCCAGCTGGTGCTGAACA AGCAGGACGCGATGACCGAGTTCGACACCCTTGAACCGGGCCGCTTCCAGGCACTCAATGACGGCACGCGGGTCACCTATACCGAAACCCTGACCGAAGA CCGTGCCAACCTGGGCGGGGTGTTCATCTCCGAGAAGCGCCTGGGCCAGGACAAGAAAGACCGTGGCATCTCCGTGCTGGTGGCCGAGTCCGGTCGCCAG GACGTGCGTCCCGATGGCAGTCGCTACCTGATCCTGGAGAACGGCTATCGCTATGACGGCAGTCCCGGCCAGGCCGACTACCGCGCCATCAAGTACGACA CTTACGGCGTGTTGCTCGCCCGTCCGGATGTCAGCGACGAGGTGACTGACCGCGACGCCATCCCCACGAAGGATTTGTTCGGCAGCAAGGAACTGCGCTC CATTGCCGAGCTGCAATGGCGTATTTCCCTGCCACTGCTGGTGTTTATCGTGACCTTGATGGCCGTGCCGTTGTCGCGCGTCAACCCACGTCAGGGCCGC TTCCTCAAGCTGTTGCCAGCGATCCTGCTGTACATGGCTTACCTCACCATTCTGATTTCCGCTCGCGGCTCCCTGGAGAAGGGCAAGCTTTCGCCGACCC TGGGGTTGTGGTGGGTGCACGGGATCTTCCTGGTGATCGGCCTGGGCCTGCTCTACTGGGAACCTATCCGTTTGAAAATGTTGAGCCGTCGCGGCCAGAA GGAGTTGGCTCGTGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCGATCGCTACATTGGTAGCAGCGTCCTGATCGCCATTCTGGCGGTTCTGGGCATCATCCTGGGCCTTGCCTCGTTGTTCGCCTTCATCGATGAAGTG GGCAACGTGAGCGACACCTACACCGTGTGGGATGTACTGAGCTACGTGGCACTCACCGCGCCGCGTCGGCTCTACGACATGATGCCGATGGCTGCGCTGA TCGGCTGCTTGATCGGCCTGGGCAGCCTGGCCAGCAACAGCGAACTGACCATCATGCGTGCCGCCGGGGTGTCCATCGGCCGTATCGTCTGGGCGGTGAT GAAGCCCATGTTGCTGCTGATGCTGTGCAGCGTGCTGATCGGTGAATACGTCGCGCCGCCGGCAGAAACCACCGCCCAAGCCAACCGCGCCCTGGCGCAG GGTTCGGGCGATGCGCAAAGCGCCAAGCATGGCCTGTGGCATCGCCAGGGTGATGAGTTCATCCACATCAACGCCGTGCAACCGGGCGGCCTGTTGATCG
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| Amino Acid Sequence |
>permease
MIVFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFLQLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLG MTMIPAAGIALIVAWLSLSLAPQGAMQFQLVLNKQDAMTEFDTLEPGRFQALNDGTRVTYTETLTEDRANLGGVFISEKRLGQDKKDRGISVLVAESGRQ DVRPDGSRYLILENGYRYDGSPGQADYRAIKYDTYGVLLARPDVSDEVTDRDAIPTKDLFGSKELRSIAELQWRISLPLLVFIVTLMAVPLSRVNPRQGR FLKLLPAILLYMAYLTILISARGSLEKGKLSPTLGLWWVHGIFLVIGLGLLYWEPIRLKMLSRRGQKELARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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