Pseudomonas sp. RIT357, BW43_RS16285
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGCAGAACGCCTTCGACATCGTTGCCGGCCACGACAAACGCAAAGTCGCCTTGCTGGGCCTGAGCTTCAAGGCCGGTACCGACGACCTGCGTGAAAGCC CGCTGGTAGAGCTGGCAGAAATGCTGATCGGCAAAGGTTTCGACCTGAGCATCTACGACAGCAACGTCGAGTACGCCCGTGTCCACGGTGCGAACAAAGA TTACATCGAAGGCAAGATCCCGCACGTGTCGTCCCTGCTCAACTCGGACTTCGACGACGTGATCAACAACTCCGACGTGATCATCCTCGGTAACCGTGAC GAGAAATTCCGCGCCCTGGCGCAGAACGCACCGCACGGCAAGCAAGTGATCGACCTGGTGGGCTTCATGTCCAAAGCCACCTGCGCGACCGGTCGCACCG AAGGCATCTGCTGGTAACAGCAACGGCAAGTTTCAGGCGGCGCGCGTTTCCATCCCCAGCGCTCGCCGCCTGAAACCTCCTTCACCTTCGGAAGATGCTT
|
|
| DNA Sequence for Gene |
>BW43_RS16285
ATGTCCAAGTTAAAACACGTACTACTGCAATCCGCCGGCTGGCTGTTCTTCCTCAGCCTGCTGATGGGTCTCGCCCTGCTGTTGCCGGCGAGTACGTTCG ACTCCGAGTCGAAGAATTTTATTTTCCTGATTGGCGCCGTCGGTATCTGGCGCTATTCGATGGGTGCTACGCATTTCTTTCGCGGCATGCTGTTCTTGTA CGTGGTCTACCCGCACCTGCGTCGTAAAGTGCGCAAGCTGGGCAAGTCTGCCGACCCGTCCCACGTGTTCCTGATGGTTACAAGCTTCAGGATCGATGCG CTGACCACCGCGCAGGTCTACAGCTCTGTGATCCGCGAGGCCATCGAATGCGGCTTCCCCACCACCGTGGTCTGCTCGCTGGTGGAAATGTCCGATGAGC TGCTGGTCAAGAGCCTCTGGGAGAAGATGAACCCTCCAGAGCACGTGAAGCTCGACTTCGTGCGCATCGCCGGCACCGGCAAGCGCGACGGCCTGGCCTT CGGTTTCCGCGCCATCTCCCGCCACTTGCCGGACGACCGCGCCGTGGTGGCGGTGATCGATGGCGACACCGTGCTTGCCGAAGGCGTAGTGCGCAAAACC GTGCCGTGGTTCCAGCTGTTCGGCAATGTCGGCGGCCTGACCACCAACGAGTTCTGCGAAGTACGCGGCGGCTACATCATGAGCGAGTGGCACAAACTGC GCTTCGCCCAGCGCCACATCAACATGTGCTCCATGGCCCTGTCCAAGCGCGTGCTGACCATGACTGGTCGCATGTCGGTGTTCCGTGCCAGCGTGGTCAC CGACCCGGGCTTTATCGCCGACGTGGAAAGCGACTCGCTGCAACACTGGCGCCTGGGCCGCTTCAAGTTCCTCACCGGCGACGATAAGTCCAGTTGGTTC AGCCTGATGCGCTTGGGCTACGACACCTTCTACGTGCCGGACGCCGCGATCAACACCGTGGAACACCCGCCGGAAAAGAGCTTTATCAAGGCCAGCCGCA AGCTGATGTTCCGCTGGTACGGCAACAACCTGCGCCAGAACTCCCGCGCCCTCGGCCTGGGCGTACGCCGCCTCGGTCTGTTCACCAGCGTGGTGCTGTT CGACCAGCGCGTGTCGATGTGGACCTCCCTGCTCGGCCTGACCGTGGCGATTATCGCCACCTTCAAATACGGCGGCGCGTTCATCCTCGCGTACCTGTTG TGGATCGGTATTACCCGCCTGATCCTCACGCTGTTGCTGTCGTGTTCCGGCCACAAGATCGGCCCGGCTTACCCGGCGATTCTCTATTACAACCAGATCA TGGGCGCGCTGGTGAAGATCTACGTGTTCTTCCGCCTTGATCAACAGTCCTGGACTCGCCAGGACACCAAACTGACCCGCGATTTGGCCAGCTTTCAACG TTGGTTCAACACCTGGTCGTCTCGGACCATGACCTTCTCCGCCGGCAGCATTTTCGTCGCCGTGTTGCTGATGATGGTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCTGCCAAGCCTGAATTAACTAGGAAATCGAAAATTATGAACAGCCAAGCAAACGTCAATGTTGTCCACGAATCCGAAGCCCAACGCCAACACGCACGG GTAAAAATCCCGGCCAAATTGCGCTTCTTCGGCAATGACGGCAAACCCACCGAGGCGCGGGTGCTCGATCTGTCCGCCGGTGGCCTGGCATTCACTGCAA CCCAACCGCTCAACGTCGGTGAAGTGCACAAGGGTCGCCTGCAGTTCGTGATCGATAACCTCGGTCTGGCGATGGACGTCGAATTGCAGATCCGCTCTTA CGACCGCCAGAGCGGCCGTACCGGTTGCCAGTTCCAGAACCTGGAACAGCAGGATATTTCCACCCTGCGGCACCTGATCACCTCGCACTTGTCCGGCGAC ATCGTGTCCATGGGTGACGTGCTGGCGACCCTGCAACGCGACAACTTCACCAAGGCGCGCAAGGTCAAGGACAGCGGCAGCGGCATGACCGCACTCGGTC
|
|
| Amino Acid Sequence |
>glycosyl transferase
MSKLKHVLLQSAGWLFFLSLLMGLALLLPASTFDSESKNFIFLIGAVGIWRYSMGATHFFRGMLFLYVVYPHLRRKVRKLGKSADPSHVFLMVTSFRIDA LTTAQVYSSVIREAIECGFPTTVVCSLVEMSDELLVKSLWEKMNPPEHVKLDFVRIAGTGKRDGLAFGFRAISRHLPDDRAVVAVIDGDTVLAEGVVRKT VPWFQLFGNVGGLTTNEFCEVRGGYIMSEWHKLRFAQRHINMCSMALSKRVLTMTGRMSVFRASVVTDPGFIADVESDSLQHWRLGRFKFLTGDDKSSWF SLMRLGYDTFYVPDAAINTVEHPPEKSFIKASRKLMFRWYGNNLRQNSRALGLGVRRLGLFTSVVLFDQRVSMWTSLLGLTVAIIATFKYGGAFILAYLL WIGITRLILTLLLSCSGHKIGPAYPAILYYNQIMGALVKIYVFFRLDQQSWTRQDTKLTRDLASFQRWFNTWSSRTMTFSAGSIFVAVLLMMV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|