Pseudomonas sp. RIT357, BW43_RS20650
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGGCCTGATCACCAAAGTCTACTTCCCTCGCCTCCTCATTGGCGGGGCTTACGCCGTAGGCGCCGCCGTTGACTTCCTGATCGCCTACACGTTGCTGA TTACGCCTTTCGCCATTATCTATGACGTTTGGACAATTCAGTTGCTGCTCATCATGCCGTTGCTACTGGCCTGTACACTCATGACAGGCCTGGGCATAGG CCTGATGCTCGCGCCTTTAAATGCCAAGTATCGAGACGTAAAACACTTGGTACCCTTGGCCTTACAACTTTTTTATTACTCAACACCTGCTATTTACCCG GTCTCGGCTGTCCCGCCTTGGGCTAAACCCTGGTATGCAGTCAACCCACTCTCGCTGGTGATTACCGGTTACCGTGACGCCATGCACGGCCACTGGCCCG CACAATCCACCCTGCTTACGCTCATTGCCATTGCAGTGACTTGCTTCTCGGTTGGCGTGTTTATATTCCAGCACTTCGATAAAAATGTGGTAGACACCCT
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| DNA Sequence for Gene |
>BW43_RS20650
ATGACATGGGCTATTCGTTGCGAGAACGTTTCCAAACTTTATCGGATTGGCAAGTCCAACGTTACCGCCGCCGAAATGATCAATATGCGTATTCGGTGGA TGCTCGGCCGAGTGATTAACCCGCTGCAAAAGTCGAAAACTGCGAAACCGGTGGAAACCACTCACGAATCGCACACCATTCTCGACGCCATGCAGACCCA AGATGCGCCACCCAACCATTTCTGGTCTCTGAAGGACGTGGACCTGGAGATAAAGCAAGGTGATCGAGTCGGTATTATCGGTCCCAACGGTTGTGGCAAA AGTACACTGCTAAAGATCTTGTCCAGAATCACGTCGCCCTCCCATGGCGGCTTTCGATTCCGTGGACGATTGATCAGCCTTCTGGAGATCGGAACAGGAT TTCACGGCGATCTCAGTGGCCGCGAAAACATCTACCTGAACGGCTCGATCATGGGCATGAAACCTCAGGAAATCAGCCGTCGTATCGAGGAAATTATCGA GTTCTCGGAACTCGGCGAACTGATTGACACGCCGGTGAAGCGCTATTCCTCAGGCATGTATGTGCGCCTCGCCTTTTCCGTAGCGGCCCACCTTGAATCC GAGATTCTCATCGTCGATGAAGTGTTGGCGGTAGGTGATGCTGCGTTTCAGAGACGCTGCACCGAAAAAATGCTTCAAGTAGCCGACCAGGGACGCACAC TGCTGTTTGTCAGCCACGACATGGATGCTGTCAACCGCATTTGCAATAGAGCCGTACATATGGCTCACGGCCGCATTGTTAACGACAGCAAAATCGAACT GCCGAAAAGCGTCGAAGACAAACAAATTTCTACGCAAAGTGTCTCAGACATCACCCGCTCTTATATACGCTCAGGCATTCAACTGACACCGGCAGTGACG TGGGCTGAGGCCAACGCGCCGCTGTTTGACGACTGCGTAAGACTCGACTCGATCATGGTTCTTGATCAAAACGGCAATCCGAGTCCCGAATTTGACGTGA AGGAAGAGTTTGTTATCGAAGTCAAGTTCACGGTTCTTGAGGCGAAATGGCCGATTAATGTGCACCTGCACCTGAAGGACTTGGCGGGCCATTATGTACT GGTGAGCATGGACAACCTGTACACCGGCACGGATGTCAGGGCCGTGGGCCAACATATCGAGCGTTGCACTGTTAAGTCGCCGTTGCTCAATGTTGGAGAC TATCGTGTCGATGTCGAACTGTGGCCTGGCGCTGAAATCGATCACCGGATCATGAAGCAGGCGGTCATCAGCTTCACGGTTGCCGATGACAGTGAACCCA CCGGAGTTCGTGGGAACTGGCCCAACGCATGGCCCAACTGCATGGTGCGGCCTCACCTATCGTGGGATGTTGATTTGCCCGTAAACCGTCAGGCGCGCTA G
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGTGATCGTGGACAATGCACACACTCTTTCCCCCGCATCCGCGGGGAAAGAGGTCATTTTGATCTCGTCTCCACATCAACTTTTACATGCTCTCTGCG CGCTTCGTTTCGATAGAGAATCCAGGAATATTGCAAGAGAAACCCCGGCCACTCTAGTGCTGTGGTCCTATCAACTGATGGACCACTCGCCGAACTCAAA AAGTCGGCAATTTTTTGATGCCGCACTCAAAAGCTTCCCGTTCATCACCGGAGTGCTGCCATCACTGAAGGAACGTAAAGGACCGCTCTCCGCTTACCGA AAATTGTCAAAACGTGCAGAGTGGCTCAGGGAGTATTTGAACATCACTCCTGGAGAATGTGCCGCGTTTTATTACTCGCACGATGCCAGCTCCGAACATA CTGCGCAGGCATTCATGCAGGCTCTATCAGCAAAACGAAATATTTGTTATGGAGACTCCCCTGGCTTTCTCTATCCAAATATAAAGCCCCCTGCGCCGAC
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| Amino Acid Sequence |
>sugar ABC transporter ATP-binding protein
MTWAIRCENVSKLYRIGKSNVTAAEMINMRIRWMLGRVINPLQKSKTAKPVETTHESHTILDAMQTQDAPPNHFWSLKDVDLEIKQGDRVGIIGPNGCGK STLLKILSRITSPSHGGFRFRGRLISLLEIGTGFHGDLSGRENIYLNGSIMGMKPQEISRRIEEIIEFSELGELIDTPVKRYSSGMYVRLAFSVAAHLES EILIVDEVLAVGDAAFQRRCTEKMLQVADQGRTLLFVSHDMDAVNRICNRAVHMAHGRIVNDSKIELPKSVEDKQISTQSVSDITRSYIRSGIQLTPAVT WAEANAPLFDDCVRLDSIMVLDQNGNPSPEFDVKEEFVIEVKFTVLEAKWPINVHLHLKDLAGHYVLVSMDNLYTGTDVRAVGQHIERCTVKSPLLNVGD YRVDVELWPGAEIDHRIMKQAVISFTVADDSEPTGVRGNWPNAWPNCMVRPHLSWDVDLPVNRQAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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