Pseudomonas sp. RIT357, BW43_RS20930

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SMART	SM00091	pas_2	IPR000014	PAS domain	313	379	4.0E-8
SUPERFAMILY	SSF141868	EAL domain-like	IPR035919	EAL domain superfamily	607	849	3.92E-88
SMART	SM00052	duf2_2	IPR001633	EAL domain	602	844	2.9E-111
CDD	cd00130	PAS	IPR000014	PAS domain	322	417	2.77215E-4
Gene3D	G3DSA:3.30.450.20	PAS domain	-	-	299	425	9.5E-13
SMART	SM00267	duf1_3	IPR000160	GGDEF domain	420	592	7.4E-62
SUPERFAMILY	SSF55073	Nucleotide cyclase	IPR029787	Nucleotide cyclase	436	594	1.1E-47
Pfam	PF00563	EAL domain	IPR001633	EAL domain	608	839	6.8E-73
PANTHER	PTHR44757	DIGUANYLATE CYCLASE DGCP	-	-	295	850	0.0
NCBIfam	TIGR00254	JCVI: diguanylate cyclase (GGDEF) domain	IPR000160	GGDEF domain	428	590	6.4E-42
CDD	cd01948	EAL	IPR001633	EAL domain	608	844	4.54201E-113
Gene3D	G3DSA:3.30.70.270	-	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	426	604	1.3E-55
CDD	cd01949	GGDEF	IPR000160	GGDEF domain	432	590	1.54234E-59
Pfam	PF05228	CHASE4 domain	IPR007892	CHASE4	65	218	4.9E-20
Pfam	PF00990	Diguanylate cyclase, GGDEF domain	IPR000160	GGDEF domain	432	587	7.9E-46
NCBIfam	TIGR00229	JCVI: PAS domain S-box protein	IPR000014	PAS domain	310	426	6.7E-9
SUPERFAMILY	SSF55785	PYP-like sensor domain (PAS domain)	IPR035965	PAS domain superfamily	301	418	4.67E-14
Gene3D	G3DSA:3.20.20.450	EAL domain	IPR035919	EAL domain superfamily	605	850	1.6E-97
FunFam	G3DSA:3.30.70.270:FF:000001	Diguanylate cyclase domain protein	-	-	426	593	2.3E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.