Pseudomonas sp. RIT357, BW43_RS21375
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0019867 | outer membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.170.130.10 | - | IPR037066 | TonB-dependent receptor, plug domain superfamily | 132 | 262 | 5.6E-31 |
| PANTHER | PTHR47234 | - | - | - | 101 | 883 | 0.0 |
| Pfam | PF00593 | TonB dependent receptor | IPR000531 | TonB-dependent receptor-like, beta-barrel | 362 | 879 | 2.6E-42 |
| SMART | SM00965 | STN_2 | IPR011662 | Secretin/TonB, short N-terminal domain | 47 | 98 | 1.8E-5 |
| Pfam | PF07715 | TonB-dependent Receptor Plug Domain | IPR012910 | TonB-dependent receptor, plug domain | 134 | 253 | 1.2E-23 |
| SUPERFAMILY | SSF56935 | Porins | - | - | 120 | 883 | 5.49E-101 |
| Gene3D | G3DSA:2.40.170.20 | - | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | 263 | 883 | 9.8E-59 |
| Gene3D | G3DSA:3.55.50.30 | - | - | - | 18 | 129 | 4.3E-22 |
| CDD | cd01347 | ligand_gated_channel | - | - | 138 | 883 | 5.35792E-71 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.