Pseudomonas sp. RIT357, BW43_RS21630
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACATCTTCCTGGCCCTGACCAACGATGACGAAGCCAACATCATGTCGTCGCTGCTGGCCAAGCGGCTGGGGGCGAAGAAGGTGATGACGATCATCAACAA CCCGGCCTATGTCGACCTGATCCAGGGCGGCGATATCGACATCGCCATCAGCCCGCAACTGGCGACCATCGGCACCTTGCTGGCCCACGTACGCCGTGGC GATATCGTCAGCGTGCACTCCCTGCGGCGCGGCGCGGCGGAAGCCATTGAGGCGATCGCCCATGGGGATTCGAAGTCGAGCAAAGTGATCGGCAAAGCCA TCCGCGATATCGGCCTGCCGCCGGGCACAACCATTGGCGCGATCATTCGTGACGAAGAGGTGATCATTGCCCACGACGATACGATGATCGCCACGGGTGA CCACGTGATCCTGTTCCTGGTGGATAAAAAACATATCCGCGATGTGGAGAAGTTGTTCCACGTGGGATTGAGCTTTTTCTGATCAACCGGAGTGACCGAC
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| DNA Sequence for Gene |
>BW43_RS21630
ATGCTCGAATCCCTGGAAAAAATGCTCGCCAAGGGTGTGGATAACTCGCTGCTGCGCTTTGGACTGGGCAAGGGTTATTTGGATCTGAAGGACAACGCCA AGGCGGCGGAGCATTTGCAGAAATGCGTCGAGTTCGATCCGAAGTATTCGGCGGCGTGGAAGTTGTTGGGCAAGGCACAGTTAGGCCAGGGTGATAACTC CGCAGCGCGACAGGCGTGGGAGAAGGGCGTTGAAGCGGCCCAGGCCCATGGCGACAAGCAGGCCGAGAAAGAGATGACGGTGTTCCTGAAGAAACTCGAC CGCCAAAGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGATCGAAAATGTGGGAGGGGCAAGTCGAATCGTCGCACCGCCCCTCCCACATTTGGTTTTGTATTGTCTTTGGGTCAATACCACCGCTCTTCACCCG GCGGGCGTTTCTTGAAGCGCTTCATGCTCCACATGTACTGGCTCGGGTAGGCGCCGACATAACGCTCAACGACCTTGCTCATCGCGGCGCAAGACGTGGC TGTGTCTGTGCTGTACATGTCTTCCGGCGCAGCTTCCAGGATCACTTTGTAGCCCGAACCATCCGGCAGTCGCAGGGCATGCAGGAATACACCGACCGCC TTATGGCCCGCGAGCATATTCGGCACGAACTTGCTGGTGAGCGCCTGGGTTGCAAAGAATGGCACGAAGATCCCCGCCGATTCCGCCGGCTCCGGGTCAG CGGGAATACCCACTTGGCCACCTTTACGCACTTCCTTGATCACACTGAGGATGCCTTCCTTGGTGGAAGCCGCCACACGGTTGCCCAACTGCACGCGCTG
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| Amino Acid Sequence |
>TPR repeat-containing protein PA0015
MLESLEKMLAKGVDNSLLRFGLGKGYLDLKDNAKAAEHLQKCVEFDPKYSAAWKLLGKAQLGQGDNSAARQAWEKGVEAAQAHGDKQAEKEMTVFLKKLD RQS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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