Pseudomonas sp. RIT357, BW43_RS22670
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGATTTAACTCAGGCCGGGTTGGCATTGAGCCTGGACTGATCGCATCCAGCCGATCAAAGCCGTTGCGCAGCAGAATCGCCAGCAGATGAGCGGTTCACT CAATCGTCGCCAAACCCGGTGGCCATGTGGACGACGGCCGGACGATAAGCCCCCGCCCAGTGGAATCCCGCTCCCCGCAAACACCGCCGCATTGTGATCG ACTACACAACTTTCCGACACAATCCTGAACCTTTTCGTACATTTGAAGGTCTTTACCGCGCCCACCGGCACGCGGTCGGGCTGCATGGACTGCAGCGTTT TCAAAAACATTAAGGATTGATGTGAGCCTTTTTCCCCCTATTCCCTTCTTCGCCACTGCCTTGTGCGGTGCGAATGGCCGCGCGCGCGTATTACGCAAAC GCGCCGAGGGCATGCCTCTGGATCCGTTGATCCCTCACTCGATACACCTACTGCCGCCGGGCCTGTTGGCGGCTTTGACCTGTAGTTCATGGAGTTTGAA
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| DNA Sequence for Gene |
>BW43_RS22670
ATGAAGCGTAAGCAGTTCCAGAAAAGCCTGTTGGCAATCATGGTCGGCGCCATCAGCACGCAGGTGCTCGCGGTGGAAGTGGACCTTGGCGCGGGCAAGA CCCAGTTTGTCAGCGAGACCTACAACGAGTCGCTGATCCTCACCGGGCAAACCACCCAAGTGACCACACCGACCAGTGCGCCCCCAGCCGGGCTGGGTGT CGCCGATACCCATATCCAGGGTTCGTTGATCAACCGCGCTGACATCACGCTGAATGCCGACGGCTACACCGTGCGGGGCTTTGCTCTGGACCCGATGTAC TGGACTGGCCCGCCCAACCTCAACCCGGGCTCTGTCACCGGTGACGTGGTGCAGGCCGGTAACATCCTGATGAACAACGGTGGCGACGAAGGCCTGGAAA TCGGCAAGACCAACATTGGCGGCAGCGTGATCAACTCCGGCACGATCATTTCGACGGCACCGTCGGCGCCTGCACCGCCGCCGTTCTATATCGGTGGGGG CGAGGGCATTTACCTGCACGGCACCACCATCGGCGGCGATGTGTCCAACACTGGTCTGATCGACATGGCCGGCGAAGGCGCGATCGGCATCGTGCTGGAT CGCGACAACTTCACCCCCACCACCATCGGCGGCAAGATCCTCAACTCCGGCACTATCAAGGCCACGGGTGAAGGCGCTTGGGGCATCGAAGTGGAAACGG ATACCAGCCCGCTGCGTATCGAAAACAGCGGTTTGATTTCTGCCAACGGCAATGACGCCAAAGGCATATTTTTTTATAACGGCACCATCGATTACATCCT CAACACCGGCACGCTTGAGGCCAAGGGCACCAATGCCAATGCCTTTGAGTTCCTGGAGGCCACCTTCGCCCAGAACAGCGCGAGCGGTTCGCGCGGCATC GTCAACCGTGGCACGGTCATCGCCGATGGCACGGCGATTCTGGTCGGCCCCGATCAAACGTCATCGTTCGAGATCAACCAGCAAGCCGGCGAAATCCGCA GCAACGCCGGCACGGCCATCGATGCGCGCAACCTGGCAACCCTGAACTGGACCGGTGGCGACATCATTGGCGATGTACTCAACCTGAGCGCGGTGAATAT CGACGGCCAGGCGGGGTTCACCGGCAACCGCATCATCGCACCGGTGTCGGTCAACTCAGGGTCGCTGAACCTGTCGGCGCCCGGCACCGCCATCACCGGC AACCTCAACGTCGCCAGCGGCGCGGGCATCGATATGCATCTGTCCGACAGCGTCGTGCCGACCACGCCGTACCTGACCGTCAACGGTGCCGCCAATTTCG CCCAGGCGTCGAAGCTGACTGTGAGCGCTAACCCTGGCGACTTCGCCAGCACCAACGACGGCACGCAATACACCCTGTTGCAAGCCACCAGCGTGCAAGA CAACGGCCTGTCCGTGGGCAGCTCTTCTGCGTTGCTGAATGTGCTCAGCTACTCGTCCGATGCGCAGACGGTCAAGGCCGTGGTGGCGGTCAAGGCTGAC CAGCAAGTTGAGACAGACCTCTCTGGCGTGGGCGCGAGCCGTGCGTCGGCAACGGCGGTCAATACCTTCAAGAACGGTGTCCTGAGCCGTCTCAGCGCAG ACGATGCAGTCTTCCAGGCGCTGGCCAACGCCGGCACCGCCGACCAACTGGCACGGGTTGGTGACCAGCTCGCGCCGGACGTCAACCGTGGCGCGTTGGA CATCGCCTTGTCCGGGCAGACCGTGGTCAACGGCGCGATCTTCAACCGCCTCACCGAGCAGCGTGAAGCCAAAAAAGCCGGAGGTGTGTGGGTGCAGGGC CTAAGCAGCAACATGGATCAGGACGGTCGCGGCGGCAACAACGGCTACTCGGCCAACAGCAGCGGCATGGCGGTGGGTGTGGACAGTCGTGTGAGCGACA CCACGACCCTGGGCGTGGCTTACAGCTACCTCAATTCGAATATCCATTCGGACCTGGGCAACAAGACCGACGTCGAGGGGCACGCACTGTCGCTGTATGG CAACTGGTCGCTGCAAGACTGGTTTGTCGATGGCAGCCTCAGCTACGGCCACAACGAAAACGACAGCAAGCGCCACATCGCCGGTACCACGGCCAAGGGC AGCTACGACAGCAATGTGTTGTCGGCCAGTGTGATCGGTGGCTACAGCTTCAAGCCGTCGCAAGCGGTGGTGGTCGAGCCACGGGTGGCTGCGCGTTATT CCAACGTGCGCATGGATGGCTACGACGAGAAAGGCTCCTCGGCCGCACTGAGCACGCGTTCGCAGCGTTATGAAGTGGGTGAGTTGGGCGCCGGTGTGCG TCTGGCGGGCAACCTGCCGATGGGCGCTGGCAGCCTGCAACCGGAAGCGACCTTGATGGCCTATCACGACCTGATGGGTGATCGCGTGGCGCAAACCTCC AGCTTCGTGGCCGGTGGTTCAGCGTTTACCGTGACCGGTGCGTCGGTGGCGCGTGACAGCTATGAGGCCAGTGTTGGCGTTAACTATCAGGTGTCGGACT TCAGCGTGGGCGCCAGCTATACGCGCCAGGCGCGCAGTGGTTTTGATGCTGACGGCGTAATGCTCAAAGCACGCTACGCGTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAACCGTCTGGCCGTAATACTGATTTGTGGTGAGGCTGTTCACCACAGATCAGCCCTGCTTTGGTTGTGATCAGAGCAACTTGCGCTGCACCGGTTAGC AGGTTGCAAGACCTATCCGTGGTGAGCGGGCTTGCCCCGCGCTGGGCTGCGCAGCGGCCCCAAGGCCAGGCAATGCGTTCTGTCTGAAAGGACGCGGTGT TTGTAACAGGGGCTGCTTCGCAGCCCAGCGCGGGGCAAGCCCGCTCACCACAAAAATGCCCCTGTTCACCACAAGAAAGCTTCTGTTCATCACATAACAA GCCCCACTGGGCCTGCCTCAGTGGTGTGAGGTCAGAGCAACTTGCGCTGCACCGGTTAGCAGGCTGCAACACCGATCTGTGGTGAGCGGGCTTGCCCCGC GCTGGGCTGCGCAGCGGCCCCAATGCCAGACAATGCGTTCTGTCTGAAAGGATGCGGTGTTTTTACCAGGGGCTGCTTCGCAGCCCAGCGCGGGACAAGC
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| Amino Acid Sequence |
>autotransporter
MKRKQFQKSLLAIMVGAISTQVLAVEVDLGAGKTQFVSETYNESLILTGQTTQVTTPTSAPPAGLGVADTHIQGSLINRADITLNADGYTVRGFALDPMY WTGPPNLNPGSVTGDVVQAGNILMNNGGDEGLEIGKTNIGGSVINSGTIISTAPSAPAPPPFYIGGGEGIYLHGTTIGGDVSNTGLIDMAGEGAIGIVLD RDNFTPTTIGGKILNSGTIKATGEGAWGIEVETDTSPLRIENSGLISANGNDAKGIFFYNGTIDYILNTGTLEAKGTNANAFEFLEATFAQNSASGSRGI VNRGTVIADGTAILVGPDQTSSFEINQQAGEIRSNAGTAIDARNLATLNWTGGDIIGDVLNLSAVNIDGQAGFTGNRIIAPVSVNSGSLNLSAPGTAITG NLNVASGAGIDMHLSDSVVPTTPYLTVNGAANFAQASKLTVSANPGDFASTNDGTQYTLLQATSVQDNGLSVGSSSALLNVLSYSSDAQTVKAVVAVKAD QQVETDLSGVGASRASATAVNTFKNGVLSRLSADDAVFQALANAGTADQLARVGDQLAPDVNRGALDIALSGQTVVNGAIFNRLTEQREAKKAGGVWVQG LSSNMDQDGRGGNNGYSANSSGMAVGVDSRVSDTTTLGVAYSYLNSNIHSDLGNKTDVEGHALSLYGNWSLQDWFVDGSLSYGHNENDSKRHIAGTTAKG SYDSNVLSASVIGGYSFKPSQAVVVEPRVAARYSNVRMDGYDEKGSSAALSTRSQRYEVGELGAGVRLAGNLPMGAGSLQPEATLMAYHDLMGDRVAQTS SFVAGGSAFTVTGASVARDSYEASVGVNYQVSDFSVGASYTRQARSGFDADGVMLKARYAF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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