Strain | Pseudomonas sp. RIT357 contigs1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CAAAGTTCTCAGAAATTCATCGCGCGCAACCGCGCGCCTCGGGTGCAGATCGAGTACGACGTCGAGCTCTACGGCGCCGAGAAAAAGGTCCAGCTGCCCT TCGTGATGGGTGTGATGGCCGACCTCGCCGGCAAACCTGCCGAGCCTCTGGCGCCAGTGGCTGATCGCAAGTTCCTTGAAGTGGACGTCGACAACTTCGA CTCGCGCCTCAAGGCCATGCAGCCGCGCGTAGCGTTCCACGTACCGAACGAATTGACCGGCGAAGGCAACCTGAGCCTGGATATCACGTTCGAAAGCATG GACGACTTCAGCCCGGCCGCCGTGGCGCGCAAAGTCGACTCGCTGAACCAGTTGCTCGAAGCCCGCACCCAGCTGGCCAACCTGCTGACCTACATGGACG GCAAGACCGGCGCTGAAGAAATCATCATGAAGGCAATCAAGGACCCGGCACTGCTTCAGGCACTTGCCAGCGCGCCTAAGCCTGCAGGGGACCAATAATC
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DNA Sequence for Gene |
>BW43_RS24765
ATGACTGACAATACCGCCCGCGAAGGCAGCCAGATCCTGGGTGCCACCGAAGAAGCCAGCGAGTTCGCCAACCTGCTGCTGCAAGAGTTCAAACCCAAGA CCGAGCGTGCCCGCGAAGCCGTGGAAACCGCTGTGCGCACCTTGGCCGAACAGGCTCTGGCGCAAACAGACCTGGTGTCCAACGACGCGATCAAGTCGAT CGAATCGATCATCGCCGCCATCGACGCCAAGCTCACCGCCCAGGTCAATCAGATCATCCACCATCAGGACTTCCAGCAGCTGGAAAGCGCCTGGCGTGGC TTGCACTACCTGGTCAACAACACCGAGAGCGATGAGCAGCTCAAGATCCGCGTGCTCAACATCTCCAAGCCGGACCTGCACAAGACCCTGAAGAAATTCA AGGGCACCGCGTGGGACCAGAGCCCGATCTTCAAGAAAATGTACGAAGAAGAATACGGCCAGTTCGGCGGCGAACCGTATGGTTGCCTGGTCGGCGACTA CTACTTCGATCAGTCGCCTCCGGACGTCGAGTTGCTGGGCGAGCTGTCGAAAGTCTGCGCGGCCATGCACTCCCCGTTCATCGCTGCGGCCTCGCCGACC GTGATGGGCATGGGCTCGTGGCAGGAACTGTCGAACCCGCGCGACCTGACCAAGATCTTCACCACCCCGGAATACGCCGGCTGGCGCTCGCTGCGTGAAT CGGAAGATTCGCGCTACATCGGCCTGACCATGCCGCGCTTCCTGGCGCGTCTGCCGTATGGCGCCAAGACCGACCCGGTGGAAGCTTTCGCCTTCGAAGA AAATACCGACGGCGCCGACAGCTCCAAGTACACCTGGGCCAACGCCGCATACGCGATGGCGGTGAACATCAACCGTTCGTTCAAGCACTACGGCTGGTGC TCGCGCATCCGTGGCGTGGAGTCCGGTGGTGAAGTGGAAAACCTGCCGGCCCACACGTTCCCTACCGACGACGGTGGTGTGGACATGAAGTGCCCGACCG AAATCGCCATCAGCGACCGCCGTGAAGCGGAGCTGGCGAAGAACGGTTTCATGCCGCTGCTGCACAAGAAAAACACCGACTTCGCCGCGTTCATCGGCGC TCAGTCGTTGCAGAAACCGGCCGAATACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCCGCGCGCCTGCCGTACCTGTTCGCCACCTGCCGTTTC GCGCATTACTTGAAGTGCATCGTGCGCGACAAAATCGGTTCCTTCAAAGAGAAGGACGAGATGCAGCGCTGGTTGCAGGACTGGATCCTCAACTACGTCG ACGGTGACCCGGCGCACTCCACCGAAACCACCAAGGCCCAGCACCCACTGGCTGCCGCCGAAGTGATCGTGGAAGACGTCGAAGGCAACCCGGGGTACTA CAACTCCAAGTTCTACCTGCGTCCGCACTACCAGCTCGAAGGGCTGACCGTGTCGCTGCGCCTGGTATCGAAACTGCCTTCGGCGAAAAGCGCCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCCACGGATGAGCTGGCTCTTCTGTGGGAGGGGCTTGCCCCCGATAGCATCACTGGGGTGTGACTGACACACCGAGGTGCCTGCATCGGGGGCAAGCCCC CTCCCACACAAAGGCACTGCCCATTTGGAGTTACTCAAATTCAGTGGCAAGCGCCACACAGGGAGAAAACATGGCTGTTGATATTTTCATCAAGATCGGC GACATCAAGGGCGAGTCCATGGACAAGGCCCACAAGGACGAAATCGACGTACTGAACTGGAGCTGGGGCATGGCCCAGTCCGGCAACATGCACGTGGGCG GTGGTGGTGGTGCAGGCAAGGTGAATATCCAGGACCTGTCGCTGACCAAGTACGTCGACAAAGCTTCGCCGAACCTGATGATGCACTGCGCCAGCGGCAA GCACATCGACAAGGTCAAGCTGACTGTGCGCAAGGCCGGTGGTGAAAGCCAGGTCGAGTACATGGTGATCAACCTGGAAGAAGTGCTGGTCACGTCGCTG
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Amino Acid Sequence |
>EvpB family type VI secretion protein
MTDNTAREGSQILGATEEASEFANLLLQEFKPKTERAREAVETAVRTLAEQALAQTDLVSNDAIKSIESIIAAIDAKLTAQVNQIIHHQDFQQLESAWRG LHYLVNNTESDEQLKIRVLNISKPDLHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGELSKVCAAMHSPFIAAASPT VMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIGLTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHYGWC SRIRGVESGGEVENLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRF AHYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVIVEDVEGNPGYYNSKFYLRPHYQLEGLTVSLRLVSKLPSAKSA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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