Pseudomonas sp. RIT357, BW43_RS24765

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT357 contigs1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CAAAGTTCTCAGAAATTCATCGCGCGCAACCGCGCGCCTCGGGTGCAGATCGAGTACGACGTCGAGCTCTACGGCGCCGAGAAAAAGGTCCAGCTGCCCT TCGTGATGGGTGTGATGGCCGACCTCGCCGGCAAACCTGCCGAGCCTCTGGCGCCAGTGGCTGATCGCAAGTTCCTTGAAGTGGACGTCGACAACTTCGA CTCGCGCCTCAAGGCCATGCAGCCGCGCGTAGCGTTCCACGTACCGAACGAATTGACCGGCGAAGGCAACCTGAGCCTGGATATCACGTTCGAAAGCATG GACGACTTCAGCCCGGCCGCCGTGGCGCGCAAAGTCGACTCGCTGAACCAGTTGCTCGAAGCCCGCACCCAGCTGGCCAACCTGCTGACCTACATGGACG GCAAGACCGGCGCTGAAGAAATCATCATGAAGGCAATCAAGGACCCGGCACTGCTTCAGGCACTTGCCAGCGCGCCTAAGCCTGCAGGGGACCAATAATC
DNA Sequence for Gene
>BW43_RS24765
ATGACTGACAATACCGCCCGCGAAGGCAGCCAGATCCTGGGTGCCACCGAAGAAGCCAGCGAGTTCGCCAACCTGCTGCTGCAAGAGTTCAAACCCAAGA CCGAGCGTGCCCGCGAAGCCGTGGAAACCGCTGTGCGCACCTTGGCCGAACAGGCTCTGGCGCAAACAGACCTGGTGTCCAACGACGCGATCAAGTCGAT CGAATCGATCATCGCCGCCATCGACGCCAAGCTCACCGCCCAGGTCAATCAGATCATCCACCATCAGGACTTCCAGCAGCTGGAAAGCGCCTGGCGTGGC TTGCACTACCTGGTCAACAACACCGAGAGCGATGAGCAGCTCAAGATCCGCGTGCTCAACATCTCCAAGCCGGACCTGCACAAGACCCTGAAGAAATTCA AGGGCACCGCGTGGGACCAGAGCCCGATCTTCAAGAAAATGTACGAAGAAGAATACGGCCAGTTCGGCGGCGAACCGTATGGTTGCCTGGTCGGCGACTA CTACTTCGATCAGTCGCCTCCGGACGTCGAGTTGCTGGGCGAGCTGTCGAAAGTCTGCGCGGCCATGCACTCCCCGTTCATCGCTGCGGCCTCGCCGACC GTGATGGGCATGGGCTCGTGGCAGGAACTGTCGAACCCGCGCGACCTGACCAAGATCTTCACCACCCCGGAATACGCCGGCTGGCGCTCGCTGCGTGAAT CGGAAGATTCGCGCTACATCGGCCTGACCATGCCGCGCTTCCTGGCGCGTCTGCCGTATGGCGCCAAGACCGACCCGGTGGAAGCTTTCGCCTTCGAAGA AAATACCGACGGCGCCGACAGCTCCAAGTACACCTGGGCCAACGCCGCATACGCGATGGCGGTGAACATCAACCGTTCGTTCAAGCACTACGGCTGGTGC TCGCGCATCCGTGGCGTGGAGTCCGGTGGTGAAGTGGAAAACCTGCCGGCCCACACGTTCCCTACCGACGACGGTGGTGTGGACATGAAGTGCCCGACCG AAATCGCCATCAGCGACCGCCGTGAAGCGGAGCTGGCGAAGAACGGTTTCATGCCGCTGCTGCACAAGAAAAACACCGACTTCGCCGCGTTCATCGGCGC TCAGTCGTTGCAGAAACCGGCCGAATACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCCGCGCGCCTGCCGTACCTGTTCGCCACCTGCCGTTTC GCGCATTACTTGAAGTGCATCGTGCGCGACAAAATCGGTTCCTTCAAAGAGAAGGACGAGATGCAGCGCTGGTTGCAGGACTGGATCCTCAACTACGTCG ACGGTGACCCGGCGCACTCCACCGAAACCACCAAGGCCCAGCACCCACTGGCTGCCGCCGAAGTGATCGTGGAAGACGTCGAAGGCAACCCGGGGTACTA CAACTCCAAGTTCTACCTGCGTCCGCACTACCAGCTCGAAGGGCTGACCGTGTCGCTGCGCCTGGTATCGAAACTGCCTTCGGCGAAAAGCGCCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCACGGATGAGCTGGCTCTTCTGTGGGAGGGGCTTGCCCCCGATAGCATCACTGGGGTGTGACTGACACACCGAGGTGCCTGCATCGGGGGCAAGCCCC CTCCCACACAAAGGCACTGCCCATTTGGAGTTACTCAAATTCAGTGGCAAGCGCCACACAGGGAGAAAACATGGCTGTTGATATTTTCATCAAGATCGGC GACATCAAGGGCGAGTCCATGGACAAGGCCCACAAGGACGAAATCGACGTACTGAACTGGAGCTGGGGCATGGCCCAGTCCGGCAACATGCACGTGGGCG GTGGTGGTGGTGCAGGCAAGGTGAATATCCAGGACCTGTCGCTGACCAAGTACGTCGACAAAGCTTCGCCGAACCTGATGATGCACTGCGCCAGCGGCAA GCACATCGACAAGGTCAAGCTGACTGTGCGCAAGGCCGGTGGTGAAAGCCAGGTCGAGTACATGGTGATCAACCTGGAAGAAGTGCTGGTCACGTCGCTG
Amino Acid Sequence
>EvpB family type VI secretion protein
MTDNTAREGSQILGATEEASEFANLLLQEFKPKTERAREAVETAVRTLAEQALAQTDLVSNDAIKSIESIIAAIDAKLTAQVNQIIHHQDFQQLESAWRG LHYLVNNTESDEQLKIRVLNISKPDLHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGELSKVCAAMHSPFIAAASPT VMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIGLTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHYGWC SRIRGVESGGEVENLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRF AHYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVIVEDVEGNPGYYNSKFYLRPHYQLEGLTVSLRLVSKLPSAKSA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site