Pseudomonas sp. RIT357, BW43_RS25280
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTCCACCTTACTATCAAAGATCATTTATCTGCGTACAACTAAAAACTCAAACTATCTAAAAGCCAATCTTACAAGCCCACATTTAAAAGCCGCCCACAC TGAACGCTCAACTATAAATAAATAACACCTAGGCAAAATCGCCGGACCGAAGTATTAACACTCCACCCCTTCAATTAAACCGGAAAAAATATCAATGATT GTAAGAGTACTCAGCGGCAGCCATTCCACACTGGAATATTCGTTGTGCGAATCAAAACAACAACTTGGAGGACTAATACAGAAGCATGTAGGAATTAGTT ACCAATCCCATAAATAAAGCCCCGGAAATCAAGGACTACGGCATCTGTTAACTTTGTAATGCAATCGTCATGAAAATCTCCTACAACCCGCATCGGCAAT TTCCGCTGAAGCCCTGATTGGAATTCCTATGGCGCTACGCGTTGGCGCCAGCGGTCGATCGTGGCACGATGGTCAGGTTATCGACCGAGACCCCCAAACC
|
|
| DNA Sequence for Gene |
>BW43_RS25280
ATGCCGCAATCCCAAGCCAAGAATCTGTCCCTGATCGCCGCCATAGACCTGGGTTCCAATAGCTTTCACATGGTCGTGGCCAAGGCCCAGAACGGCGAAA TCCGCATCCTTGAACGGCTCGGCGAGAAAGTGCAACTGGCTGCCGGGATCGACGACGCCCGCCAGCTCAATGAAGAATCCATGCAGCGCGGGCTCGATTG CCTCAAGCGTTTTGCGCAGCTGATTAACGGTATGCCCCTGGGCGCGGTGCGGATTGTCGGCACTAATGCCCTGCGCGAAGCGCGCAATCGCGGCGAATTC ATCCGCCGCGCCGAGGAAATCCTCGGCCACCCGGTAGAAGTCATCTCCGGCCGTGAAGAGGCGCGCCTGATCTATCTAGGCGTGTCCCACACCTTGGCCG ACACCCCCGGCAAGCGTCTGGTGGCGGACATCGGCGGCGGCAGTACCGAGTTCATCATCGGCCAGCGTTTCGAACCGCTGCTGCGCGAAAGCCTGCAGAT GGGTTGCGTCAGCTATACCCAACGTTACTTTAAGGACGGCAAGATCACTCCGGCGCGCTACGCCCAGGCCTACACCGCAGCGCGGCTGGAAATCATGAGT ATCGAACACGCCCTGCACCGCCTGACTTGGGATGAGGCCATCGGCTCGTCTGGCACCATCCGTGCTATCGGCCTGGCACTCAAGGCCGGCGGCCATGGCA CGGGTGAGGTCAACGCCGAAGGCCTGGCGTGGCTCAAGCGCAAGCTATTCAAACTGGGGGACGCCGAGAAAATCGACTTCGACGGCATCAAGCCCGACCG TCGCACCATTTTCCCGGCCGGCCTGGCGATTCTCGAAGCCATCTTCGACGCCCTCGAACTGCAACGCATGGACCACTGTGACGGCGCCCTGCGCGAAGGT GTGCTCTACGACCTGCTGGGCCGCCATCACCACGAGGACGTACGTGAGCGCACGCTCAGCTCGCTGATGGAGCGTTATCACGTCGACCTGGAACAAGCCG CCCGTGTGGAACGCAAAGCCTTGCACGCGTTCGACCAAGTGGCCGAGGACTGGGACCTGGAAGACGGCGTATGGCGAGAGCTGCTGGGCTGGGCCGCCAA GGTGCATGAGGTAGGCCTGGATATCGCCCACTACCACTACCACAAGCACGGCGCCTACCTGATCGAGCACTCCGACCTGGCCGGGTTCTCCCGGGAAGAC CAGCAGATGCTCGCACTGCTGGTGCGCGGCCATCGTCGCAATATTCCCAAGGATAAGTTTGCCGAGTTCGGTGATGAAGGCATCAAGCTGATCCGCCTGT GCGTACTGCTGCGCTTCGCGATCCTGTTCCACCACATTCGCGGCACCCAGGAAATGCCCCAGGTGAGCCTGCGCGCCAATGGCGAGAGCCTGGATGTCGT GTTCCCGAAAGGCTGGCTGGATGAGAACCAACTGACCCAGGCGGACTTCGCCCAGGAAGCGGAGTGGCTGACACGAGTGGGGTTCAGCCTGAACCTGCGC TAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGAACACCGGAAACAACTGTGGGAGGGGGCTTGCTCCCGATGGCGGTAGACCAGTCAATGAATCTGTTGACTGGTCTACCGCCATCGGGAGCAAGCCCCC TCCCACATTTTCAGACCGCGTCGGTGCTTAGTTCACCGACAGAATCGGACTGCCCAACTTCTCTAGCAACGTCGCCTGCGCACTGCGTGGGTTCTGGTTG CCGGTCGGCGTATTGCGCACGTAACGGCCGTCGGATTGCAGGCTCCAGCTGTGGGTGTTGTCGGTCAGGTAGCTTTCCAGCTCTTTCTTGACCCGCATGA TCAGCTTCTTGCCCTCTACAGGGAAGCAGGTCTCCACACGCTTATCCAGGTTGCGCTCCATCCAGTCGGCACTGGACAGGAACATCTGCTCTTCGCCGCC GTTGAGGAAGTAGAACACCCGCGTGTGCTCCAGGAAGCGGCCGATGATCGAACGCACATGGATATTGTGCGACACGCCAACAATGCCCGGACGCAGGCAG
|
|
| Amino Acid Sequence |
>exopolyphosphatase
MPQSQAKNLSLIAAIDLGSNSFHMVVAKAQNGEIRILERLGEKVQLAAGIDDARQLNEESMQRGLDCLKRFAQLINGMPLGAVRIVGTNALREARNRGEF IRRAEEILGHPVEVISGREEARLIYLGVSHTLADTPGKRLVADIGGGSTEFIIGQRFEPLLRESLQMGCVSYTQRYFKDGKITPARYAQAYTAARLEIMS IEHALHRLTWDEAIGSSGTIRAIGLALKAGGHGTGEVNAEGLAWLKRKLFKLGDAEKIDFDGIKPDRRTIFPAGLAILEAIFDALELQRMDHCDGALREG VLYDLLGRHHHEDVRERTLSSLMERYHVDLEQAARVERKALHAFDQVAEDWDLEDGVWRELLGWAAKVHEVGLDIAHYHYHKHGAYLIEHSDLAGFSRED QQMLALLVRGHRRNIPKDKFAEFGDEGIKLIRLCVLLRFAILFHHIRGTQEMPQVSLRANGESLDVVFPKGWLDENQLTQADFAQEAEWLTRVGFSLNLR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|