Pseudomonas sp. RIT357, BW43_RS25465
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCACCCGGAGTCACCCATCATGCGTCTCAAATATGCTGTCGCTACCCTTGCTGTGCTTTCCCTTCCTGTCGGTTCAGCCATGGCCGACAGTTTCTGGC GCAATGTCATCTCGTCGGGCGCCACCACCGGCTCGACGTACCTGACCTTCAAGGACCACAAGCTGGTCGTTGCCGCACAAGACGACGCAGGCAGCTTTGT TGCCAGCGACGGCGGCATCCGTGGCCCATACCTGGAAGCCGCCATGCAGAAAGTCCGCGCCGACAATCCTGGCCTGCAGGCCACGGATATGGAGCTGGCT AACGCTATCCTCGCGAAAAACGCCGTCACCGAGTGATTTCCGCACTCTGAAGAATGCCGCTTTTGAAGCGGCATTTTTTTTGCCCGTAACATGACGATTC ATTCACAGGTGACAGGCTATATTCAGTCAAGCCGTGCAACCATGCCGGCACTGATACCTCCCGTACTCATCGCCAACCTGAAACGGATGCATTCGTCGTT
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| DNA Sequence for Gene |
>BW43_RS25465
ATGAGCCAACTGCCCTTTCTGCCGTTCTCCAAACCCACCATCGATGAAGCCACCATCTCGGCGGTGGGCGATGTATTGCGTTCGGGCTGGATCACCAGCG GGCCGAAGGTGCAGGCGTTCGAGGCGCAGCTGTCGGAATACTTTGGCGGGCGCCACGTTCGCACCTTCAACTCGGGCACCTGCACCATGGAGATTGCCTT GCGCATCGCCGGTATCGGGCCTGGGGATGAAGTCATCACCACACCGATTTCCTGGGTGGCAACGGCCAACGTGATTCTGGAAGTCGGCGCCACACCTGTG TTCGCCGATATCGACCCAATCACCCGCAATATCGACCTGTCCCAGGTGGAAGCCGCGATCACACCGCGCACCAAGGCCATCATCCCCGTTTACCTGGCCG GGCTGCCGTTGGATATGCCAATGCTTTACGCGCTGGCCAACAAGTACAAACTGCGTATCGTCGAAGACGCGGCCCAGGCCCTTGGCTCCAGTTGGGATGG CGAACGCATTGGCGCCACCGGGGACTTCGTTTCGTTCAGCTTCCAGGCCAACAAGAACATCACCTCGTCCGAGGGTGGTTGCCTGGTTTTGAATAGCGCC GAAGAGGCACGCCTGGCAGAAAAATACCGCCTGCAGGGCGTCACCCGTACCGGCTTCGACGGCCTGGATGTTGATGTGCTGGGTGGCAAGTTCAATATGA CCGATATCGCTGCGGCCATTGGCCTGGGGCAGTTTGCCCATATCGAGAAAATCACCGCCCACCGCCAGAACCTGGCGAGGCACTACTTCAAGTGTTTCGG CAGTGACTTTGAAGAGAAGTACGGCGCACAACTGCCACCCGCCGACTTCGAAAACAGCAACTGGCACCTGTTCCAGCTAGTGCTGCCGGAGCGTCAGGAC GGCCTGCCGGCCCGCGCAACGTTCATGGAACAGATGCAGGCTCATGGCGTGGGCATTGGTTATCACTACCCACCGATCCACCTGCTGAGCCTTTATCGGG CACAGGGTTTCAAGGAAGGCATGTTCCCGGTGGCGGAAAAGGTTGGGCGCTTGATTGTTTCATTGCCGATGTTCACGGCGATGACTGAGGCGGATGTGGA GCGGTCGGTGGCGGCAGTGAAAGCGGTGCTCAAACGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCTATAGGGGCCGGTTTGCCGGCCCCTATAGGGTTATGTGCGGTGTTACTCGCCGATGGCGGCTTTGTAACCAGCAGCATCCAGCAGTTTTTCCAGATC AGCCGGGTTGCTTGGCTTGAGCTTGAAGATCCAGGCGCCATACGGGTTGGAGTTCAGCAACTCGGGGCTACCACTCAGCTCCTCGTTGACTGCAATCACT TCGCCTGCAACCGGGGCGTAGATATCCGAAGCGGCCTTGACCGACTCCACCACACCTGCCTGATCAGTCGCGCCAAACTGGGCGCCGACTTCGGCCAACT CAACAAACACCACATCACCCAACGCTTCCTGGGCGTGGTCGGAGATCCCGACGGTCACGGTACCGTCAGCTTCCAGACGGGCCCATTCATGACTCTCGGC AAAACGCAGGTCGGCCGGGATATTGCTCATAGTCTGTGTCCTCAGAAGTAGTGTCAGCGGCCATCGGCCTGCCGGAAATAGTTAGATCAAGGTTTTGCCA
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| Amino Acid Sequence |
>aminotransferase DegT
MSQLPFLPFSKPTIDEATISAVGDVLRSGWITSGPKVQAFEAQLSEYFGGRHVRTFNSGTCTMEIALRIAGIGPGDEVITTPISWVATANVILEVGATPV FADIDPITRNIDLSQVEAAITPRTKAIIPVYLAGLPLDMPMLYALANKYKLRIVEDAAQALGSSWDGERIGATGDFVSFSFQANKNITSSEGGCLVLNSA EEARLAEKYRLQGVTRTGFDGLDVDVLGGKFNMTDIAAAIGLGQFAHIEKITAHRQNLARHYFKCFGSDFEEKYGAQLPPADFENSNWHLFQLVLPERQD GLPARATFMEQMQAHGVGIGYHYPPIHLLSLYRAQGFKEGMFPVAEKVGRLIVSLPMFTAMTEADVERSVAAVKAVLKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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