Pseudomonas sp. RIT357, BW43_RS26015
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACCCGAACCTGTCGGTGATCCTGGAAACCCTGACCGCCCTGGGCACCCAGCAGATCATGGGCCAGGCTTACCTGCCAGCGATCAAGGACGGCGACAAGC GCATTCTGATGATCGACGGCGAACCGGTGGACTACTGCCTCGCGCGTATCCCGGCGGCAGGCGAGACCCGAGGCAACCTGGCGGCAGGTGGGCGCGGTGA AGCACGGCCTTTATCGGATAAGGATCGCTGGATCGCTAGCCAAGTTGGCCCGACCTTGCGGGAAAAAGGCCTGCTGTTTGTAGGCCTTGACGTAATTGGT GAAAATCTCACCGAAATCAACGTCACCAGCCCGACCTGTATTCGCGAGATAGACAATGCATTTGGCACGAACATCGGCGAAATGCTGATGGCCGCCATTG AGCGCAAGCTCGCAGCCAAGTGATATAGAACAGCCGGACACACACCAACATTGCGTTATCATGCGCCACCTGTGAAACGCGCGATGTTGGTTCTTTTGTC
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| DNA Sequence for Gene |
>BW43_RS26015
ATGACACTCCCGTCCGATCTGCCCCCCGAACTCTCCCACAGCGGCGTGCGCCCGGCTGATCGGCTCGGATTTACCCTGTTTCTGGCTGCCTTGATTCATT TGGCCTTGCTCCTTGGCGTGGGCTTCACCATGGTCGAACCCAAGCAGATCACCAAGACCCTGGAAATCACCCTGGCCACGTTCAAGAGTGAAAAGAAGCC CGAGAAGGCAGATTTTCTAGCCCAGGACAATCAACAGGGCAGCGGCACCCTCGACAAGAAAGCCATCCCCAAGACCACCGAACTGGCGCCGTTCCAGGAC AACAAAGTCAATAAAGTCACGCCACCTCCTGCGCCGAAGCCCGAGGTCAAGCAGGCTACGCCCAAGCCTACGGTGGCCACCATCGCACCCAAACCGCAAA AAGCCCCGGTCCAACGCGAAAAGACCAAGACCGAGCCGCAGCCGGAGCCCGTCAAACCGGCGCCTACCTTCGACAGCTCGACCCTGTCCGACGAAATCTC CAGCCTGGAAGCCGAACTGGCTAACGAACAGCAGTTGTACGCCAAGCGCCCACGCATCTACCGCTTGAATGCCGCCTCGACCATGCGCGACAAAGGTGCC TGGTATAAAGACGAGTGGCGTAAGAAGGTCGAGCGCATCGGCAACCTCAACTACCCAGAAGAAGCGCGGCGCCAGCAGATCTACGGCAACTTGCGTCTAT TGGTATCGATCAACCGCGACGGCACCTTATATGAAGTGCAGGTGTTGGAGTCCTCCGGCCAACCACTGCTGGACCAGGCCGCCCAACGCATCGTGCGCCT GGCCGCGCCCTTTGCCCCGTTTACCGGCGACCTGAATGACGTGGACCGCCTGGAAATCATCCGTACCTGGAAGTTTGCCAAGGGCGATCGGCTCTCCAGC AACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGACATGTCCTGCCACAGGTAACTCCAGCTTGTCAGTTCGCCCCTCCAACGCCACACTAGCGGACATGAAAAATGTCAGCCCGACCTACCTCAAGCAC CAATTCCTGATCGCCATGCCCCATATGGCCGACCCGAACTTTGCGCAGACCTTGACCTACATCGTCGAGCACACGGCCAATGGTGCCATGGGGTTGGTGG TGAACCGCCCGCAAGCGCTGAACCTGGCCGATATCCTTGAGCAACTGCGTCCGGAGATCGATCCGCCGGCCCGTTGCCAATCGGTGCCGATCTACATCGG CGGGCCGGTACAAACTGATCGCGGCTTTGTGCTGCACCCGACCGGGCCGACGTTCCAGGCCACGGTGGACCTGGACGGTGTGTCGCTGTCCACCTCCCAG GACGTGTTGTTCGCCATCGCCGACGGTGTAGGCCCAGAGCAAAGCGTGATCACCTTGGGGTACGCCGGTTGGGAAGCAGGGCAACTGGAGGCCGAACTGG
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| Amino Acid Sequence |
>energy transducer TonB
MTLPSDLPPELSHSGVRPADRLGFTLFLAALIHLALLLGVGFTMVEPKQITKTLEITLATFKSEKKPEKADFLAQDNQQGSGTLDKKAIPKTTELAPFQD NKVNKVTPPPAPKPEVKQATPKPTVATIAPKPQKAPVQREKTKTEPQPEPVKPAPTFDSSTLSDEISSLEAELANEQQLYAKRPRIYRLNAASTMRDKGA WYKDEWRKKVERIGNLNYPEEARRQQIYGNLRLLVSINRDGTLYEVQVLESSGQPLLDQAAQRIVRLAAPFAPFTGDLNDVDRLEIIRTWKFAKGDRLSS N
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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