Pseudomonas sp. RIT357, BW43_RS26150
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACCTGGGCCACGGCGCCCTGGGGTTTACCCTGGCATGCGGCAGCGGCCAACTGTTGGCCGAGCTGATCGGTCGGCACGCCCTTTCCATTGATATGCAGG GCCTGACGCCCCGCGCCGCTTGAGGATGTAACCATGACCATCAATCGAATCAGCAGCAACGAGCGTCTTTCTGGTGCCGTGACTTTCAAGGACTTGGTGT TCTTGTCGGGTCAGGTACCGGGCGACGGTCAGGATGTCGCGACACAAACCCGAGAAGTGCTGGCCAAAATCGACGGGTTGCTGGCCCAGGCGGGCAGCGA CAAGGACCATCTGCTCAATGCGACCATTTACCTCAAAGACATCGGCACCGGTTTTGCGCCGATGAACGAGGTGTGGTCGGCGTGGCTGTCGCCGGGGATG GCGCCCACGCGAACCACCCTGCAGGCGGAGCTGGCGCGACCGAGTGTGTTGGTGGAAATCAGTGTCATCGCTGTACGTAAATAACCAACGGAGCAGAACA
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| DNA Sequence for Gene |
>BW43_RS26150
ATGAAAAAAATCCTGTTGACCGGTTGTACCGTGGGGCTGTTGTTAGGGGCTCAGGTTCAGGCAAATGAACCGGCGCTGAACGGCACGTTGAGCAAGATCG CCAACGCCAAGTCCATCACCCTGGGCTATCGCGATGCGTCGGTGCCGTTTTCCTATGTGGGGGATCACAGCGGCAAACCCATGGGTTATTCGGTGGACCT GTCGAGCAAGATTGTCGAGCGCATCCAGCAGAAAACCGGAGTGGCCGACCTCAAGGTGAAGTACAACCTCGTGACGTCCCAGACGCGAATTCCGCTGGTG CAGAACGGCACCGTTGACTTGGAATGCGGTTCCACCGGAGTGACCGCCGAGCGCCAGAAGCAGGTGGCATTTTCCTATGGGTTTATTTATGTGAAAGGCC AGTTGCTGACGGCTAAAGACAGCGGCATCAAAGGCTTCACCGACCTTGCCGGCAAGAACGTGGTGACCACCGCCGGCACCACCAACGAACGTTTTCTCAA GAGCTACAACGCCGAGCACAAAACCAATATGTTCGTGATCAGCGCAAAGGATCATGGCGAAGCGTTCAAGATGCTGGAGACGGGCCGCGCCGTGGCGTTT TATATGGACGACGCGCTCCTCTACGGCGAACGCGCCAAAGCCAAGGACCCGCACAAATGGGTGGTGGTGGGCGAGGAGCAGTCGCGGGAGATCTACAGCT GCATGGTGCGCAAGGACGATCCGCAGTTTCTTGCGGTGGTCAACGAGACCCTCGGCGACCTGTACCGCTCGGGGGAGATCAACGGGATTTACCAGCGCTG GTTTGAACAGCCGATTCCGCCCAAGGGCTTGAACCTGGAATTCCCGATGACCAGCGAGTTGAAGGCGATTATTGCCAAGCCGGTGAGTGATCCGGTGGAG TAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAAGGGGTAACCGAATCTAAATGTGGGAGGGAGCAAGTCCCTCCCGCATTACGATCGTTTTTGCAGCTGTGGACTAGAAGTCGCCCCAGAGTTGTTGGGC GACGGCCAGCGCTACCACTGGCGCGGTCTCGGTACGTAGCACCCGTGGGCCGAGACGGGCGGCATGGAAGCCGGCCGCTTGGGCGGTGTCGACTTCATTG TCAGTCAACCCGCCTTCCGGCCCGATCAGAAACGCCAGGCTCGCAGGCTTGGCATGGCTGACCATCGGCTCTGCCACCGGGTGCAGCACCAGCTTCAGAT CCGCCTCGACCTGCTTCAGCCAGTCCGCCAGCAACAGCGGTGGGTGAATCACCGGCACCGTCGAACGCCCGCATTGCTCGCACGCACTGATCGCCACCTG GCGCCAGTGCAGCAGGCGTTTGTCAGCGCGCTCGTCCTTGAGTCGCACTTCGCAGCGGTCGCTGAAAATCGGGGTGATTTCGTTGACCCCCAGTTCAGTG
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| Amino Acid Sequence |
>ABC transporter
MKKILLTGCTVGLLLGAQVQANEPALNGTLSKIANAKSITLGYRDASVPFSYVGDHSGKPMGYSVDLSSKIVERIQQKTGVADLKVKYNLVTSQTRIPLV QNGTVDLECGSTGVTAERQKQVAFSYGFIYVKGQLLTAKDSGIKGFTDLAGKNVVTTAGTTNERFLKSYNAEHKTNMFVISAKDHGEAFKMLETGRAVAF YMDDALLYGERAKAKDPHKWVVVGEEQSREIYSCMVRKDDPQFLAVVNETLGDLYRSGEINGIYQRWFEQPIPPKGLNLEFPMTSELKAIIAKPVSDPVE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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