Pseudomonas sp. RIT357, BW43_RS26565
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT357 contigs1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCCAGGGCGGCCCGCTGATGCATGTGATCGCCGGCAAGGCCGTGTGCTTCAAGGAAGCCCAGGAGCCAGGCTTCAAGGTCTACCAGCAGCAGGTGATC GACAACGCCCAGGCCATGGCCGGCGTGTTTATCAAACGCGGCTACGATGTAGTGTCCGGCGGCACCGATAACCACTTGTTCCTGGTCAGCCTGATCCGTC AGGGCCTCACCGGCAAAGAGGCGGATGCCGCCCTCGGTCGCGCCCACATCACCGTCAACAAAAACGCCGTGCCGAATGACCCGCAGTCGCCGTTCGTGAC CTCGGGCCTTCGCATCGGCACCCCGGCGGTGACCACGCGCGGTTTCAAAGTGGCGCAGTGTGTTGAGTTGGCCGGCTGGATCTGCGACATCCTCGACAAC CTCGGCGATGCCGACGTCGAGGCCAACGTGGCCAAGCACGTGTCTGCCCTGTGCGCTGATTTCCCGGTTTATCGCTGAGCGCGGTTTTGGAGTAATGACT
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| DNA Sequence for Gene |
>BW43_RS26565
ATGCAACGCTACTCGGGCTTCGGCCTCTTCAAGCACTCCCTCAGCCACCACGAAAACTGGCAGAAGATGTGGCGCACGCCGACCCCTAAGAAGGTCTACG ACGTGGTTATCGTCGGCGGCGGCGGGCATGGTCTGGCGACCGCCTACTACTTGGCGAAAGAGCACGGCATCACCAACGTGGCCGTGGTCGAGAAAGGTTG GTTGGGCGGTGGTAACACCGCGCGCAACACCACCATCGTGCGTTCCAACTACCTGTGGGATGAGTCGGCGCACCTGTACGAACACGCGATGAAACTGTGG GAAGGCCTGTCCCAGGACCTGAACTACAACGTGATGTTCTCTCAGCGTGGCGTCTACAACCTGTGCCACACCCTGCAGGACATCCGTGATTCCGAGCGCC GTGTGAGCGCCAACCGCCTCAACGGCGTGGACGGCGAACTGCTCAATGCCAAGCAAGTGGCCGACGAGATTCCGTACCTGGATTGCTCCAAGAACACCCG CTACCCGGTGCTTGGCGCCACCGTGCAACGTCGCGGCGGCGTGGCCCGTCACGATGCCGTGGCCTGGGGCTTTGCCCGCGCCGCTGACGCACTCGGCGTG GACCTGATCCAGCAGACCGAAGTGATCGGTTTCCGTAAGGAAAACGGCGTGTGCATCGGTGTGGAAACCAACAAGGGTTTTATCGGCGCCAAGCGCGTCG GTGTGGTGACGGCGGGTAACTCCGGCCACATGGCTTCGCTCGCCGGTTTCCGCCTGCCGATCGAATCCCACCCGCTGCAAGCGTTGGTGTCGGAGCCGAT CAAGCCGATTATCGACAGTGTGATCATGTCCAACGCCGTGCACGGTTACATCAGCCAGTCCGACAAGGGCGACCTGGTGATCGGCGCCGGTATCGACGGC TACAACGGCTACGGCCAGCGCGGCTCGTACCCGGTGATCGAACACACCATCCAGGCCATCGTCGAGATGTTCCCGGTGCTGTCGCGCGTGCGCATGAACC GTCAGTGGGGCGGCATCGTCGACACCACGCCGGACGCCTGCCCGATCATCTCCAAGACCCCAGTGCCGAACATGTTCTTCAACTGCGGTTGGGGCACCGG TGGCTTCAAGGCTACGCCGGGCTCAGGCAACGTGTTTGCCGCGAGTCTCGCCAAGGGTGAAATGCACCCATTGGCTGCACCTTTCTCTATCGACCGTTTC CACAACGGTGCGTTGATCGACGAACACGGCGCTGCGGCCGTCGCCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGAGAAATTTCCTATGTTGCATATCTTCTGTCCTCACTGTGGCGAACTGCGCTCCGAAGAGGAATTCCACGCGTCCGGCCAAGCGCACATCCCGCGCC CGCTGGACCCGAATGCCTGCACCGACGAGCAGTGGGGCGACTACATGTTCTTCCGCGACAACCCGCGCGGCCTGCATCACGAACTGTGGATCCATGCCGC CGGTTGCCGCCAATATTTCAACGCGACCCGCGACACCGTGACCTACGAAATTCTTGAAACCTACAAGATCGGTGAGAAGCCGCAATTCACCGCCAAGGCC TCTGGAGAGAAGGTATGAGCCAGATCAATCGCCTGTCCAACGGTGGCCGGATCGACCGGAATAAAGTCCTGACCTTCAGCTTCAACGGCCAGAGCTACAA AGGCTTTGAAGGCGATACCCTGGCCGCTGCATTGCTGGCCAACGGCGTCGACATCATTGGCCGCAGCTTCAAGTACTCGCGTCCACGGGGCATCTTTGCT
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| Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQRYSGFGLFKHSLSHHENWQKMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKEHGITNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLW EGLSQDLNYNVMFSQRGVYNLCHTLQDIRDSERRVSANRLNGVDGELLNAKQVADEIPYLDCSKNTRYPVLGATVQRRGGVARHDAVAWGFARAADALGV DLIQQTEVIGFRKENGVCIGVETNKGFIGAKRVGVVTAGNSGHMASLAGFRLPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG YNGYGQRGSYPVIEHTIQAIVEMFPVLSRVRMNRQWGGIVDTTPDACPIISKTPVPNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAAPFSIDRF HNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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