Pseudomonas sp. RIT357, BW43_RS27040

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT357 contigs1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TTTGGGTGCTTCCATAACGCGCGGCGGCAGGGTATCTACGCTCACATCCGGCAATGACAGGCTGAGGCTGCCCCAATTGGCGTCGGGAAATTTGCGCCGC AACGGGCCGATTGCTTGCGGCCAGTCAGCACTTTCACCGCTGCCCGGTACGATAATCACCACACCTTCGGGTTCGGCGCTGTTGGCCGGTTTCCACAGGG CGAGGAATGAGTCGCTGCCAGCCTGCAATTGTTGCTGTTCCTGCTGAGGGATGGTGCGCTCCAGCGCGGTGGCGTCTTCCTGGCTGCGCTCAAGCAGAGG CTGGCGCTCGACGGGTTTTTCGTCGGCCGGCGCGGGGGCGTCGGCGGCCTGTACAGAAAAGGCACTGGTAAACAGCAGCGACAGGCACAATGCTGGCAGT GCCGAACGGTTTCGATAGGGCATCGTAGATTTCCGGCCAGAAGAGATTCCAGCAGCCTAATGGGTTGGTCAGTTTTTGTCAGTGATGTGAGACGTGGATC
DNA Sequence for Gene
>BW43_RS27040
ATGGGTTTTCGCTGTCTGCTGGTTATCGGCTGTTTGTGCGTCGCCTTGATGGCGAACGCCTCACCTACGCCTGCAGCCCCGCAGGCGCAGCTCAATGCGC AGCAGCGCGAATGGCTGGCCCAGCACCCGGAATTGCGGGTGGGCGTAGTGCTGCAGTTGCCTTACGCGCAATACGACCGTCGCTTGCAGCGCTTGTCCGG GGCCAATGTGGAGTTGATGCAGTGGCTGGCCAAGGCGCTGAATATCGAGCTGACCTGGCGCAATTTCCCCAACCAGGAGCAACTGGAAGCCGCCGTCCGC GACGACGAAGTGGACATTGCCCCCGGCCTGCAACAAACCCCAGCCGGTTTGCGCCTGTGGCTATTCAGCGACCCATATATGCGTGTGCCCCAGCATATCG TCGGCATCCGCGAGGGCGGCGGCGCGGTTGAGCTGGAAAAACTGGACGATCAATCCCGCGTCGCCGTGCGCATGCCCAGCGCCGTGGCCGATTACTTGCG CAGCACTTATCCCAACCTCAACCTGCAAGGTGTGCCCATCGAGCGCCAGGCCTTGCAGTTATTGGTCAGCCAGCAAGCGCGTTATGCCGTGGTAGATGAA GCGCAATTAAGCCGATTATCCGGCGAGGCCGAGTTCGCCGGTTTGGCGGTGGTGGGGGACATCGGTCTGCCGCAATTGTTGCGGGTGGCCACACGGCGCG ATTGGCCCGAACTGGCGGGCATCATGGAAAGTGCCTTGGGCGCTATCCCCGCCCGCGACCTTGACCAACTGCACAGCCGCTGGCTGCAACCCAAATACCC ACGGTTATCGGAGTCGCCTGGGTTGTGGCAGAACCTCAGCCTGTTACTGAGCCTGCTGCTGCTCGCCAGTTTGGCGACCGTGTTCTGGCAGCGCCGCCAG CAACGTGTGTTGGAGCATGGCCTGCTGGCCGCCCGTGAAGAAAGCGCCGCCCGCGCTGCCGGTGCCGAAGCGCTGCGGTTGACACAGTTTTCCATCGACC AAAGCACCGTTGGCATCCTGTGGGTCAACTGGGACAGCCATGTGCGCTACGCCAACCACGCCGCCGAAAGCATGCTCGGTTATGCTCCTGGCGCACTGAT CGAGCGGCCGCTGGTTGACCTCGACCCGACCCTGGACATGGACCGCTGGCTCAATTTGTGGAAGCGCGCACGGGCCAGCGAAGAGGGACCACAGAACTTC GCCACCGATTGTTTGCGCGCCGACGGCAGCATCCTGCCGGCCAACGTGTCGTTGAGCTTTTTGCGGTTTGCCGAGGCTGAGTACTTGGTGGTTTACCTGA ACGACGTCACCGAGTTGCGCCGCACGCTGGCCGCGTTGATGCAAAGTGAAGCGCAACTACGCGAACTGTCGGCCCACCTGGAAACCGTGCGCGAGGAAGA AAAAGCCCGCATCGCCCGTGAAGTGCATGACGAACTCGGTCAGATGCTCACTGTGCTCAAGTTGGAAACGTCCATGTGCGAGCTGGCTTATGCGCAACTG GACCCTGGCCTGCACGAGCGCTTGAACAGCATGAAGCGCCTGATTGCTCAACTGTTCCAACTGGTGCGGGACGTCGCGACGGCGCTGCGCCCACCGATTC TCGATGCTGGCATTGCCTCCGCAGTTGAATGGCAAGCCCGTCGTTTTGAAGCGCGCACGCAGATTCCCTGTCTGGTTCAGGTGCCGGATAACCTGCCGAC CCTGAGCGACGCCAAGGCCATCGGCCTGTTTCGTATCCTGCAGGAGGCGCTGACCAACGTGATGCGCCATGCCCAGGCGCATACTGTGGAGCTGACGCTG GCCATAGAAGGCTCGGATTTGCGGTTGACCATCAGCGACGACGGCGTGGGTTTCGTCCAGCCTGAAGGGCGTGCGGTATCGTTTGGCCTGGTCGGTATGC GCGAGCGGGTGCTGATCATGGGCGGGCAATTGAGCCTGCACAGCGAGTTGGGGGAGGGCACCACCCTGAGTGTGACGGTGCCGCTGGATGCATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGCCAAGAGGAAGTCCCTGTGATCCGTGTACTGGTAGCCGAAGACCACACCATCGTTCGTGAAGGCATAAAACAACTGATCGGCCTGGCCAAAGACCTGC TGGTGGTGGGGGAGGCTAGCAATGGCGAGCAGTTGCTGGAGACGTTGCGCCACGTGCCGTGCGAGGTGGTGTTGCTGGACATCTCGATGCCCGGCGTCAA CGGCCTGGAAGCGATTGCGCGCATCCGTGCGTTGAGCAACCCGCCGGCGATCCTGGTGCTGTCGATGCACGACGAAGCGCAAATGGCAGCCCGTGCCCTG AAAGTCGGTGCCGCCGGTTACGCCACCAAGGACAGCGACCCGGCGCTGTTGCTGACGGCGATCCGCAAAGTCGCGGCCGGCGGGCGTTATATAGACCCGG ACCTGGCCGACCGTATGGTGTTTGAAGTCGGTCTGACCGACGCCCGGCCATTGCATTCGTTGCTGTCGGAACGGGAGTTCTCGGTGTTCGAACGCTTGGC
Amino Acid Sequence
>ABC transporter substrate-binding protein
MGFRCLLVIGCLCVALMANASPTPAAPQAQLNAQQREWLAQHPELRVGVVLQLPYAQYDRRLQRLSGANVELMQWLAKALNIELTWRNFPNQEQLEAAVR DDEVDIAPGLQQTPAGLRLWLFSDPYMRVPQHIVGIREGGGAVELEKLDDQSRVAVRMPSAVADYLRSTYPNLNLQGVPIERQALQLLVSQQARYAVVDE AQLSRLSGEAEFAGLAVVGDIGLPQLLRVATRRDWPELAGIMESALGAIPARDLDQLHSRWLQPKYPRLSESPGLWQNLSLLLSLLLLASLATVFWQRRQ QRVLEHGLLAAREESAARAAGAEALRLTQFSIDQSTVGILWVNWDSHVRYANHAAESMLGYAPGALIERPLVDLDPTLDMDRWLNLWKRARASEEGPQNF ATDCLRADGSILPANVSLSFLRFAEAEYLVVYLNDVTELRRTLAALMQSEAQLRELSAHLETVREEEKARIAREVHDELGQMLTVLKLETSMCELAYAQL DPGLHERLNSMKRLIAQLFQLVRDVATALRPPILDAGIASAVEWQARRFEARTQIPCLVQVPDNLPTLSDAKAIGLFRILQEALTNVMRHAQAHTVELTL AIEGSDLRLTISDDGVGFVQPEGRAVSFGLVGMRERVLIMGGQLSLHSELGEGTTLSVTVPLDA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site